PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G13420.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 187aa    MW: 19596 Da    PI: 9.8048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G13420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-171463255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+Wv+eIr+p +   r r +lg++ tae Aa a++aa   l+g
  LPERR05G13420.1 14 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGTYATAEAAAVAHDAAVCLLRG 63
                     59****777.**********943...5*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.2851475IPR001471AP2/ERF domain
PfamPF008478.1E-101462IPR001471AP2/ERF domain
SMARTSM003801.4E-271481IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-171475IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-261475IPR001471AP2/ERF domain
PRINTSPR003679.3E-101526IPR001471AP2/ERF domain
PRINTSPR003679.3E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRTAAGAAS GVWRYRGVRR RRWGKWVSEI RVPGTRERLW LGTYATAEAA AVAHDAAVCL  60
LRGSSVSSRR GLNFPGRAAA AYAYGGGQMV MSPRSVQRLA SDAGMAADAQ LVDLRRPRYG  120
RTAPLPGQPA AAAAGGGGGG VGGDDARHQV ACRETSDTDG SWSSGAIGSE QLIVYEDLSV  180
DDMEILM
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G13420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248363e-45AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376233e-45AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149613e-45AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-45CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195624.18e-42ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I84e-31ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0D9WGM81e-127A0A0D9WGM8_9ORYZ; Uncharacterized protein
STRINGLPERR05G13420.11e-128(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-10ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]