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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR05G11930.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
AP2 |
| Protein Properties |
Length: 457aa MW: 50027.7 Da PI: 9.1518 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR05G11930.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 40.4 | 7.4e-13 | 105 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g
LPERR05G11930.1 105 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 161
57*******************6666777775555599******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 457 aa
Download sequence Send
to blast |
MASPGPAAGM QQQKLEAVAV GGEGLGAAGA EWGRGMQQKV EVVAAAAAAA GGEGPVLGAA 60
GAGSVAEQVV APPVRRPVAA RKERVCTAKE RISRMPPCAA GKRSSIYRGV TRHRWTGRYE 120
AHLWDKSTWN QNQNKKGKQG AYDDEEAAAR AYDLAALKYW GAGTQINFPV SDYARDLEEM 180
QMISKEDYLV SLRRKSSAFS RGLPKYRGLP RQLHNSRWDA SLGHLLGNGY MGLGKDIMLD 240
GKFAGTFGLE RKIDLTNYIR WWLPKKTRQP DTSKVEEITD EIRAIESSMQ QTEPYKLPSL 300
GLHFKPSSEG LSACDILSQS DAFKSFSVKS TKLSEECTFS KEIEEGKTIT PVPATGHDTT 360
AVDMNVNELL VQRAPYTLAP VTAQMKNTWN PADPSADPLF WSNFILPSSQ PVTMATIATT 420
TFAKNEVGDN ILHVYGFPSS GLLRIYQQRF NIGINYC
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB897877 | 0.0 | AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds. |
