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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G11930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 457aa MW: 50027.7 Da PI: 9.1518 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.4 | 7.4e-13 | 105 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g LPERR05G11930.1 105 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 161 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-14 | 105 | 171 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-8 | 105 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-12 | 106 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.228 | 106 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-18 | 106 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 151 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MASPGPAAGM QQQKLEAVAV GGEGLGAAGA EWGRGMQQKV EVVAAAAAAA GGEGPVLGAA 60 GAGSVAEQVV APPVRRPVAA RKERVCTAKE RISRMPPCAA GKRSSIYRGV TRHRWTGRYE 120 AHLWDKSTWN QNQNKKGKQG AYDDEEAAAR AYDLAALKYW GAGTQINFPV SDYARDLEEM 180 QMISKEDYLV SLRRKSSAFS RGLPKYRGLP RQLHNSRWDA SLGHLLGNGY MGLGKDIMLD 240 GKFAGTFGLE RKIDLTNYIR WWLPKKTRQP DTSKVEEITD EIRAIESSMQ QTEPYKLPSL 300 GLHFKPSSEG LSACDILSQS DAFKSFSVKS TKLSEECTFS KEIEEGKTIT PVPATGHDTT 360 AVDMNVNELL VQRAPYTLAP VTAQMKNTWN PADPSADPLF WSNFILPSSQ PVTMATIATT 420 TFAKNEVGDN ILHVYGFPSS GLLRIYQQRF NIGINYC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G11930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB897877 | 0.0 | AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638088.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 2e-99 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A0D9WG27 | 0.0 | A0A0D9WG27_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G11930.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9200 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 4e-96 | AP2 family protein |