PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G10140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 253aa    MW: 26288.2 Da    PI: 6.3662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G10140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-194291255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+WvAeIr+p++   r r +lg+f tae+Aa+a+++a++ l+g
  LPERR05G10140.1 42 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 91
                     59****999.**********954...5**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-124290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-304298IPR001471AP2/ERF domain
CDDcd000181.11E-154295No hitNo description
PROSITE profilePS5103222.3794299IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-214299IPR016177DNA-binding domain
SMARTSM003803.7E-3742105IPR001471AP2/ERF domain
PRINTSPR003672.2E-104354IPR001471AP2/ERF domain
PRINTSPR003672.2E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009749Biological Processresponse to glucose
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEPAADATTT TPAESAAAAA ETATSGGASK KSKGGPENGK FRYRGVRQRS WGKWVAEIRE  60
PRKRSRKWLG TFATAEDAAR AYDRAALLLY GPRAHLNLTP NPPLPPPNPN SSSSAAAATS  120
SSSPPPPPPL RPLLPRPPAA VAAFHHYLLQ HPPPPPLYYA AAAATVSANT AARTQEAAAA  180
APAPATAPAV VGVSDSKAEE TQVEAAAVED AAGTVPAEEE SAGWGYHGGG EEDYAAALLW  240
SEPDPWFDLF NLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-164398662ATERF1
3gcc_A1e-164398662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G10140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362219e-77AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence.
GenBankAP0149619e-77AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126139e-77CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568646.13e-57ethylene-responsive transcription factor ABI4
TrEMBLA0A0D9WFF51e-175A0A0D9WFF5_9ORYZ; Uncharacterized protein
STRINGLPERR05G10140.11e-176(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-20ERF family protein