PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G09170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 346aa MW: 36733.6 Da PI: 7.4962 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.8 | 1.7e-26 | 177 | 236 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ gs++prsYYrCt++ gC++kkkv+r ++dp + e+tY g+H + LPERR05G09170.1 177 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHSC 236 8***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-26 | 169 | 236 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-24 | 174 | 236 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-36 | 176 | 238 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.609 | 177 | 235 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 177 | 236 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDEVLAQISE GFRLAGELMS ELPATQNDPG YLASRCLAIA DAYSAAVRAL QARHGASVDV 60 ATPFGGEGYL QQQQHHRPPL DFLRVCCSPE AAAGAGASTF LAAPPPSASY AWAPSDAYGA 120 GTSGGPVRRV SSSSRSPPSP SPVQPRQPGG RRRRENGEKV TVMVAAQRTG NTDLPPDDGY 180 TWRKYGQKDI LGSRYPRSYY RCTHKNYYGC EAKKKVQRLD DDPFTYEVTY CGNHSCLTST 240 TPLLTLPTAT AAAAAVTNSP ANADRQQQQP LSTSIHLGIS WPTMAPATAS QFAGVGEGRT 300 SAATAARDST DHFPVADLAD VMFNSGSSGG SSILDGIFSS HDRRDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-20 | 177 | 236 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G09170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287817 | 1e-147 | AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566384.3 | 1e-116 | WRKY transcription factor 55 | ||||
TrEMBL | A0A0D9WF31 | 0.0 | A0A0D9WF31_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G09170.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-40 | WRKY DNA-binding protein 55 |