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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G08090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 321aa MW: 35617.8 Da PI: 7.8466 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.5e-05 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H LPERR05G08090.1 65 YSCSFCGREFRSAQALGGHMNVH 87 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.43E-6 | 62 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 63 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.4E-6 | 65 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.002 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.217 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDPARYWMLA RRKLQLGDQK APRFPNPHIT VGGSSASYYE SWEERAFAED SAGHLGGCIW 60 PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGAT AEDGAGREEN SHRMPPHQSY 120 MIQPCPPQIG ALQHAYGPNP SSAPLIAAET NPNSMCGVVA YPARSLLTSS RIAWGKQVLS 180 APLTSPKSPS AGRENGKREM MFPVAVRLAQ DNERSANRVS SNLDLRFGEN ELRMSALGCR 240 SRRDYMNEND GDDEETVQVS NKRRRIDLEV NPLALSSPSS KHQQQDGDDD QHHEKVLNLC 300 HSSSVEELDL ELRLGDAPKV K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 60 | 87 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 60 | 87 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 265 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G08090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638381.1 | 1e-172 | uncharacterized protein LOC4338296 | ||||
TrEMBL | A0A0D9WEN7 | 0.0 | A0A0D9WEN7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G08090.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9594 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 5e-26 | C2H2 family protein |