PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G06630.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 297aa    MW: 33634.8 Da    PI: 7.6796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G06630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.21.9e-19140201359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                      Dg++WrKYGqK++++s++ rsYYrCt++   +C+++k v++  +  ++ + +++Y g+H+++
  LPERR05G06630.1 140 DGHQWRKYGQKNINNSNHQRSYYRCTYKheqNCKATKTVQQLYNagETIMYTVVYYGQHTCK 201
                      9**************************9999*********9766115567899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-21127202IPR003657WRKY domain
SuperFamilySSF1182909.02E-21133202IPR003657WRKY domain
SMARTSM007745.6E-32138202IPR003657WRKY domain
PfamPF031066.5E-23140201IPR003657WRKY domain
PROSITE profilePS5081114.183140201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKNKSSCCLK TDVSNCFRCD HRPAIDEIVR EQSLVSQLRA VVLPALETKA DERAEIVAQL  60
FGSILDCSRK VICALRSHYV GVLESPPPEA VVIDKRRAKR KNSEGSKKMG DGAKSKSVHE  120
HKRRRYTNST SQVTPVPHYD GHQWRKYGQK NINNSNHQRS YYRCTYKHEQ NCKATKTVQQ  180
LYNAGETIMY TVVYYGQHTC KTNTSNASLH VIETSTPQSI STTCSDLGDT RQKLDNMHTP  240
ELAEVCSEFG SYHTLEEEHN TLGLEDEDMH KLLDTFACGP LDLDSWEIDA IVRSGFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-131402011069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G06630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354201e-103AC135420.4 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence.
GenBankAP0149611e-103AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692985.11e-164PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0D9WE490.0A0A0D9WE49_9ORYZ; Uncharacterized protein
STRINGLPERR05G06630.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.16e-19WRKY DNA-binding protein 38