PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 423aa    MW: 46455.2 Da    PI: 6.5671
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.15.4e-92774186344
             GRAS   6 lecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      ++cA a+++gd ++a+  L++ +e+    p+g  + R+ ++f+ AL +rl+   ++ ++ l+    +    +e+   ++ f+e+ P lkfsh+t
  LPERR05G05670.1  77 VTCAGAIQAGDYAAASGSLSNTREIliKIPTGVGIGRVLTHFADALYERLFLVFPNSMSPLQ---PP---RAERRELFRGFYEARPHLKFSHFT 164
                      79**********************99999**********************96665555444...44...4556778899************** PP

             GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                      aNqaIlea++g+  vH+iDf ++ G+QW++++qa+a Rp+gpp lR+  vg+ ++++++el+e+g rLa+f ++++vpf f+ ++++++++l++
  LPERR05G05670.1 165 ANQAILEAFKGCGVVHVIDFALMDGIQWLSFIQAMAIRPGGPPILRLSRVGPLATDDHDELREVGIRLAEFSRSCNVPFAFHGIAVEKIDELRT 258
                      ********************************************************************************************** PP

             GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
                      +++++ p E++aVn vlqlhrll ++ ++       +++ vL+l+ sl+Pkv+++ve+ adhn++s+lerf+++l +y a+fdslea   r++ 
  LPERR05G05670.1 259 WMFQTVPSETIAVNAVLQLHRLLVDQDAVVAasspaPINIVLDLIMSLNPKVFTMVEHKADHNKSSLLERFTNSLFFYGAMFDSLEAAS-RHDg 351
                      **********************955443332234557788*********************************************8884.4444 PP

             GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                         + + + +++l+ ei ++v++eg++r+erhe + +W er+++aG++++p s+++  qa + +r  
  LPERR05G05670.1 352 gdGTGNPLAEAFLQGEIADIVSHEGSSRVERHEPMTRWIERMQRAGMTQIPQSQNELWQAAMHVRSS 418
                      668888999999*************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.28446423IPR005202Transcription factor GRAS
PfamPF035141.9E-8977418IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAHLGGFGGW SPMDVTAALA KAINAINNSN NGQAVYAPLT PGMVVPPPGV SSALQIEAAR  60
RWQEMEKLAL QLVSHQVTCA GAIQAGDYAA ASGSLSNTRE ILIKIPTGVG IGRVLTHFAD  120
ALYERLFLVF PNSMSPLQPP RAERRELFRG FYEARPHLKF SHFTANQAIL EAFKGCGVVH  180
VIDFALMDGI QWLSFIQAMA IRPGGPPILR LSRVGPLATD DHDELREVGI RLAEFSRSCN  240
VPFAFHGIAV EKIDELRTWM FQTVPSETIA VNAVLQLHRL LVDQDAVVAA SSPAPINIVL  300
DLIMSLNPKV FTMVEHKADH NKSSLLERFT NSLFFYGAMF DSLEAASRHD GGDGTGNPLA  360
EAFLQGEIAD IVSHEGSSRV ERHEPMTRWI ERMQRAGMTQ IPQSQNELWQ AAMHVRSSTD  420
FRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-36774139338GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLA0A0D9WDT00.0A0A0D9WDT0_9ORYZ; Uncharacterized protein
STRINGLPERR05G05670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-72GRAS family protein