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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR05G05410.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 386aa MW: 42137.4 Da PI: 7.9026 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR05G05410.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.3 | 5.8e-13 | 193 | 237 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h Er+RR+++N++f Lre+lP+a +K +Ka+iL +A +Y+++L
LPERR05G05410.1 193 HVLSERKRREKLNDSFKALREVLPPA-----TKKDKASILMRAKDYVNDL 237
7789*********************9.....9***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MDGCSWMLQA SAVGGGEHDA VMQQQLSQIY MLMDMEEHND PYAGRVAPSP SSSSFHSGDS 60 SLILAAATTT STTTATSYHH HQQPEVSSQI PPPVYGTAVD VANPKESRQS AVASAGAFRP 120 YSRWLGPKRN ILRPGTGQRA FKKAICVLSK IHSARIAQYY QAMEMAAAAA QGRPSPATGS 180 SDDSNHQQLQ LQHVLSERKR REKLNDSFKA LREVLPPATK KDKASILMRA KDYVNDLKAR 240 IAELEEKNRM HVDVDKDEEC GDDKNTETGD KIEVDIDRSV EENATQVDKC QELHVKIVLG 300 SSSGCSAMDA VASILQGLND KRDNVSLLAM NTANVSSSGR LPHLKSSSPR PTVRLQVKSS 360 SCDKETLKES VVKVVREVIQ SEKVKP
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 196 | 201 | ERKRRE |
2 | 197 | 202 | RKRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK107675 | 3e-71 | AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence. |