PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G04920.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 196aa MW: 21604.8 Da PI: 5.3448 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2.1e-30 | 99 | 157 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+s+gC+vkk+ver++ed ++v++tY g Hnh LPERR05G04920.3 99 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCNVKKRVERDREDDRYVITTYDGVHNHA 157 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 87 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 91 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.686 | 94 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-35 | 99 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 100 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAASIGLSPE AFFSSYSYSS SSSPFMASYV PEVPVATIGT DFSNELDFDY SLPAPALAGT 60 VSDEYPDNES IMMRCENEEK RARVNGRIGF RTRSEVEILD DGFKWRKYGK KAVKNSPNPR 120 NYYRCSSEGC NVKKRVERDR EDDRYVITTY DGVHNHASPG AAAAALQYYT AGDYYSPPRS 180 SAGSPPAAYS AGSLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 85 | 159 | 3 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 85 | 159 | 3 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G04920.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832802 | 1e-127 | CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654120.1 | 4e-93 | PREDICTED: probable WRKY transcription factor 51 | ||||
TrEMBL | A0A0D9WDI6 | 1e-141 | A0A0D9WDI6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G04920.1 | 1e-120 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-30 | WRKY DNA-binding protein 50 |