PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G03980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27878.7 Da PI: 9.5123 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.3e-11 | 60 | 104 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr++lP a k ++Ka+ L +v +k+L LPERR05G03980.1 60 HSEAERRRRERINAHLDTLRRILPDA-----KQMDKATLLATVVSQVKHL 104 9*************************.....67**********9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.354 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-12 | 59 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-9 | 60 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-11 | 60 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-10 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 10.386 | 148 | 224 | IPR002912 | ACT domain |
Gene3D | G3DSA:3.30.70.260 | 3.3E-5 | 149 | 211 | No hit | No description |
SuperFamily | SSF55021 | 1.03E-5 | 150 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSTCQQQQQF LHPGGYDLPS VYSGTALLPL QGGFAPEPPP PPSSLSGRSA TDQVTAMRIH 60 SEAERRRRER INAHLDTLRR ILPDAKQMDK ATLLATVVSQ VKHLKKFATH ASTASASPIP 120 PEANEVAVQC HYTGDDDPSN TCRTVYVHAT VGCDDRPGLL ADIAGAFRRL RLRPLSADMS 180 CLGGRTRHVF VLCREGEELV EVRHLKESVR QALAKVAFPE MMYSSSSRSS RSKRQRVLES 240 RFSTTVVYSH GW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 68 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G03980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638377.1 | 9e-85 | putative transcription factor bHLH107 | ||||
Refseq | XP_015638378.1 | 9e-85 | putative transcription factor bHLH107 | ||||
Refseq | XP_015638379.1 | 9e-85 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A0D9WD68 | 0.0 | A0A0D9WD68_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G03980.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 3e-23 | bHLH family protein |