PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

LPERR05G01520.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 204aa MW: 21226.4 Da PI: 6.4869

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G01520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.5	1.9e-42	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q ++lka+l LPERR05G01520.1 31 PCAACKILRRRCVDRCVLAPYFPPTDPHKFTTAHRVFGASNIIKLLQELPEENRADAVSSMVYEANARIRDPVYGCAGAICQLQKQANELKAQL 124 7********************************************************************************************* PP DUF260 95 allkee 100 a++++ LPERR05G01520.1 125 ARAQAD 130 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.869	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-42	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGSSSIDTAC TVDATTPTSP ATMATTVVMS PCAACKILRR RCVDRCVLAP YFPPTDPHKF 60 TTAHRVFGAS NIIKLLQELP EENRADAVSS MVYEANARIR DPVYGCAGAI CQLQKQANEL 120 KAQLARAQAD LAAARASHAH LVALLCMEMA ASASASPPPP TTPAAYSQLA AAAPVDALYV 180 VDGAGAAGAA MASPIGWVDE PLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	17	157	3	127	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	17	157	3	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G01520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638880.1	1e-104	LOB domain-containing protein 1
Swissprot	Q9LQR0	3e-60	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	9e-60	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0D9WC80	1e-145	A0A0D9WC80_9ORYZ; Uncharacterized protein
STRING	LPERR05G01520.1	1e-146	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-52	LOB domain-containing protein 1