PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G01420.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 427aa    MW: 46092 Da    PI: 9.7489
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G01420.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-17115164155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  LPERR05G01420.2 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                      78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-9115164IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16115173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-17116173IPR001471AP2/ERF domain
SMARTSM003805.9E-32116178IPR001471AP2/ERF domain
PROSITE profilePS5103217.596116172IPR001471AP2/ERF domain
CDDcd000184.55E-11116174No hitNo description
CDDcd000181.04E-12207252No hitNo description
SuperFamilySSF541711.77E-6207251IPR016177DNA-binding domain
SMARTSM003804.2E-13208256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MELDLNVADG VPEKQETTAR SDSGTSESSV LNAEASGGGG AATATAEEGS SSTPPPPPPP  60
PALGFLRPEP PRHQPPDIRI LAASPAPVPA APPPPPPPQP QAAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FNLSDYEDDM  180
KQMKSLSKEE FVHVLRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC  240
NGREAVTNFE PSTYDGELPT DAAAQGADVD LNLSISQPAS QQSPKRDSSS LGLQIHHGSF  300
DGSEFKRAKN DAPSELASRP HRFPLLTEHP PIWTAQPHPL FQNNEDASRP SSSDQKRKPE  360
GGVVPSWAWK QVNHPPPHLP FFSSPSSSAA ASSGFSKTAT TAAAHTASLR FDPTAPSSSS  420
SGRHHRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G01420.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8283460.0CT828346.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA215G24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806429.11e-164ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ84TB53e-93AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0D9WC670.0A0A0D9WC67_9ORYZ; Uncharacterized protein
STRINGLPERR05G01420.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.16e-86related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]