PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G01400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 374aa    MW: 42566.6 Da    PI: 9.021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G01400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-067797323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C+ Cg +F+ + +L++H+++H
  LPERR05G01400.1 77 CKVCGARFKKPAHLRQHMQSH 97
                     *******************99 PP
2zf-C2H219.72.2e-06103127123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+srk++L+rH+ tH
  LPERR05G01400.1 103 FSCHvdGCPFSYSRKDHLNRHLLTH 127
                      89*********************99 PP
3zf-C2H218.26.8e-06132157123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ Fs+k n++rH +  H
  LPERR05G01400.1 132 FACPmeGCNRKFSTKGNMQRHVQEmH 157
                      78*******************99877 PP
4zf-C2H220.61.1e-06169193123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y Cp   Cgk+F+  s L++H  +H
  LPERR05G01400.1 169 YICPeaSCGKTFKYASKLQKHEESH 193
                      89*******************9988 PP
5zf-C2H214.97.7e-05260284223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+  dC+ sFs ksnL +H +  H
  LPERR05G01400.1 260 KCHfeDCKCSFSKKSNLDKHVKAvH 284
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355273153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.98675102IPR007087Zinc finger, C2H2
SMARTSM003550.0137597IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-877101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138940.00127797No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576677.6E-1187129No hitNo description
Gene3DG3DSA:3.30.160.608.5E-10102129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.349103132IPR007087Zinc finger, C2H2
SMARTSM003550.0016103127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105127IPR007087Zinc finger, C2H2
SuperFamilySSF576676.17E-7113163No hitNo description
Gene3DG3DSA:3.30.160.601.9E-8130158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.24132162IPR007087Zinc finger, C2H2
SMARTSM003552.9E-5132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-6165193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.15E-5166193No hitNo description
PROSITE profilePS5015711.427169193IPR007087Zinc finger, C2H2
SMARTSM003550.003169193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
SMARTSM0035518201226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517202226IPR007087Zinc finger, C2H2
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
SMARTSM0035525229250IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.42E-7240301No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5240281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.988259289IPR007087Zinc finger, C2H2
SMARTSM003550.13259284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280261284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-5283311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767290316IPR007087Zinc finger, C2H2
SMARTSM003553290316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280292316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MRSVEAGAEE GESKGAAAAA AANPGRGIRR YKCEFCSVVR SKKCLIRAHV LEHHKDEVDD  60
YLRRGGGQSR KDIDRDCKVC GARFKKPAHL RQHMQSHSLE RPFSCHVDGC PFSYSRKDHL  120
NRHLLTHQGK LFACPMEGCN RKFSTKGNMQ RHVQEMHKDG SPCESKKEYI CPEASCGKTF  180
KYASKLQKHE ESHVKLDYSE VFCCEPGCMK AFTNLECLKA HNESCHRHVL CDVCGTKQLK  240
KNFKRHQRMH EGSCATERVK CHFEDCKCSF SKKSNLDKHV KAVHEQKRPF VCGFSGCGKS  300
FSYKHVKDNH EKSSAHVYIQ ANFEEIDGER PRHAGGRKRK PIPVESLMRK RVVGPDDAPA  360
CDDGTEYLRW LLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-188022120155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-188022120155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G01400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0995280.0AK099528.1 Oryza sativa Japonica Group cDNA clone:J013031H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-113TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0D9WC640.0A0A0D9WC64_9ORYZ; Uncharacterized protein
STRINGLPERR05G01400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-114transcription factor IIIA