![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR05G01000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 20132.9 Da PI: 6.8544 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00051 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H LPERR05G01000.1 45 FVCKTCNRVFPSFQALGGHRASH 67 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.27E-8 | 43 | 109 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 44 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.494 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-8 | 87 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MKRFAFDDGE MARVLMLMST SPAAAQQRSP AVIAGGNAAP AERAFVCKTC NRVFPSFQAL 60 GGHRASHKKP RLDGDGDLSG DGKPKLHGCS ICGLEFAIGQ ALGGHMRRHR AITGGMPRAI 120 VVDKKPDVVG DVGDIKRGGL WLDLNYPPCD DVAAAGDVDD DGECGHINGG GAGITFHQFL 180 DVAGAMAVDC VGY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR05G01000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC093921 | 1e-101 | AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence. | |||
GenBank | AC108504 | 1e-101 | AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence. | |||
GenBank | AK108981 | 1e-101 | AK108981.1 Oryza sativa Japonica Group cDNA clone:002-153-F01, full insert sequence. | |||
GenBank | AP014961 | 1e-101 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638278.1 | 8e-93 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D9WC10 | 1e-137 | A0A0D9WC10_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G01000.1 | 1e-138 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59820.1 | 8e-23 | C2H2 family protein |