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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
LPERR05G00880.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
Dof |
| Protein Properties |
Length: 348aa MW: 36356.3 Da PI: 8.8678 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR05G00880.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 118.2 | 3.1e-37 | 109 | 167 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
e lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
LPERR05G00880.1 109 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 167
56789************************************************998765 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MIFPPAFLDS SSWNDNNNQQ HQQQQQQQQQ QQQHAHAHAH GHHQHQLAAG CGNGGGGGDG 60
NSTGHELLQQ QQSIMAGSGG TLADGGGGGA AKPMSMSERA RIARIPLPEP GLKCPRCDST 120
NTKFCYFNNY SLSQPRHFCR ACRRYWTRGG ALRNVPVGGG YRRHAKRAKP KSAAAAASAS 180
GASTTTTTSS TCTTATATAN APPPPPQNLP AMLGSAGGNL SILPPLLRLA DFDAMSLGST 240
FSGAGAGMEQ WRFQQMQSFP FFHHAMDQAM AAAPAPATAM AMPGMFQLGL DGGGEDGGEF 300
HSHAMPSSKR DQAAAAAAGY PRGGMYGDHH LAGGYTSYSS ATTGNHLL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079356 | 4e-98 | AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence. |
| GenBank | AK108933 | 4e-98 | AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence. |
| GenBank | AP014961 | 4e-98 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | GQ183552 | 4e-98 | GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds. |
