PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G00430.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 397aa    MW: 44260.1 Da    PI: 8.2059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G00430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001292114323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+  +Cgk+F +   L++H  +H
  LPERR05G00430.1  92 CSyeNCGKTFVDVGALRKHAHVH 114
                      77779**************9887 PP
2zf-C2H218.74.6e-06119143123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   Cgk F ++s LkrH   H
  LPERR05G00430.1 119 YVCQepGCGKKFVDSSKLKRHNLIH 143
                      99*******************8777 PP
3zf-C2H217.89.1e-06149173123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp   Cgk Fs   nL++H +tH
  LPERR05G00430.1 149 FICPypGCGKAFSLDFNLRSHTKTH 173
                      78**********************9 PP
4zf-C2H218.65.3e-06179203123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp   Cgk+F++ s Lk+Hi+ H
  LPERR05G00430.1 179 HVCPfpACGKRFTSDSKLKSHIKGH 203
                      789999****************988 PP
5zf-C2H213.30.00025256281123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   Cgk + + + L+ H +t H
  LPERR05G00430.1 256 YVCPydGCGKAYIHGYKLNLHFKTqH 281
                      9*********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-1285114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36590119IPR007087Zinc finger, C2H2
SMARTSM003550.01290114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-793143No hitNo description
Gene3DG3DSA:3.30.160.606.0E-13117139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.025119148IPR007087Zinc finger, C2H2
SMARTSM003550.0015119143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121143IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-12130182No hitNo description
Gene3DG3DSA:3.30.160.604.4E-18140174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.718149178IPR007087Zinc finger, C2H2
SMARTSM003550.004149173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-8176203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0092179203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429179208IPR007087Zinc finger, C2H2
PROSITE patternPS000280181203IPR007087Zinc finger, C2H2
SuperFamilySSF576678.09E-7182203No hitNo description
SuperFamilySSF576678.09E-7251279No hitNo description
Gene3DG3DSA:3.30.160.601.5E-8252281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.016256289IPR007087Zinc finger, C2H2
SMARTSM003550.019256281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEYAAAPGSS GGYYYYPPPR EPQHKPLRRP PPRPAARWIK HWIPQDLATS SGKCSLFKWV  60
REDVYKNIKD RTAAPEPEAV KSEPTTEILF LCSYENCGKT FVDVGALRKH AHVHNDRQYV  120
CQEPGCGKKF VDSSKLKRHN LIHTGQKDFI CPYPGCGKAF SLDFNLRSHT KTHALENYHV  180
CPFPACGKRF TSDSKLKSHI KGHEKTGTPI TPQYVPSSDK PQSSTKPTTQ AATKPTTPAV  240
TKPTTPSPAT FAERPYVCPY DGCGKAYIHG YKLNLHFKTQ HPEHGQEDSG KIAAPASEHA  300
VNDRANQYNS YAEIGDLAPN PKRSKTSSGH KTPSSKAYNV KISSVSPADI SGVKNQWPGK  360
YEDDSEETEE DQGNNNMEDG WRYGSQNADD EETEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-36922058119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G00430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692445.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
TrEMBLA0A0D9WBU50.0A0A0D9WBU5_9ORYZ; Uncharacterized protein
STRINGLPERR05G00430.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-100C2H2 family protein