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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR05G00200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 254aa MW: 27950.9 Da PI: 7.2827 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR05G00200.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 28.1 | 3.6e-09 | 172 | 219 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + +k Ka +L + + Y++sLq
LPERR05G00200.1 172 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 219
8*************************9....555*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MESFSGQHEH EQQLHQQSSS SLHPYCFLSA PDPLPPLPVQ AAIPVMVAYD SSSAISFDTN 60 SMSMEYSPMV MQLQESSPLS FEDAATGDKK WMPAGIQGSC TCSLGSSQDM DGSWGKSRKH 120 RRSNVGVRGL QEKKARRVVV HGHGDVKAKE AGGEPPAGYI HVRARRGQAT DSHSLAERVR 180 REKISERMKM LQSLVPGCDK VTGKALMLDE IISYVQSLQN QVEFLSMKLA SLSPMMYELG 240 PGIDMYPDIL PQVK
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK065864 | 1e-174 | AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence. |
GenBank | HQ858853 | 1e-174 | HQ858853.1 Oryza sativa Japonica Group isolate UT1616 bHLH transcription factor mRNA, partial cds. |