PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G26050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 441aa    MW: 47931.2 Da    PI: 8.9285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G26050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-06205227223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +CpdCg+ F r+++L+ H+ + H
  LPERR04G26050.1 205 SCPDCGEIFVRPESLHLHQAVrH 227
                      8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.767204232IPR007087Zinc finger, C2H2
PROSITE patternPS000280204227IPR007087Zinc finger, C2H2
SuperFamilySSF563994.32E-19229439No hitNo description
Gene3DG3DSA:3.90.228.104.6E-12231439IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MVEAGRAAAS PFATMKTTTT KKKVLRKLDH KDNKKENNSK YRRDESQSQS NQCAAAAEPE  60
SPSYRLALKS LFSCRNSSSS HAHAHGHHRG CNSASSICKV KAGDHNPRPP RLMHKVNVKE  120
EEPYCKRRAS VSSCNSSSEQ RSVKKPQKQQ EAASSLLLSS SSSSGGSFRG MQQLSLRRLS  180
GCYECHMVVD PISGSSSMRG ATICSCPDCG EIFVRPESLH LHQAVRHAVS ELGAEDTSRN  240
IISIIFQSSW LKKQSPVCAI ERILKVHNAA RTLARFEEYR DAVKAKGMAR RGRHPRCTAD  300
GNELLRFHCA TLSCALGLHG ATHLCDGGEC GACGVIRDGF RAPAGGGGGI RTMATSGRAH  360
DAVVADGERR AMLVCRVIAG RVRRQQHEEE EVASPAAAAE PEEEEYESVA GTAGLYSNLE  420
ELDVFNPRAI LPCFVVIYRA T
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G26050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634280.11e-175uncharacterized protein LOC4337494
TrEMBLA0A0D9WBI30.0A0A0D9WBI3_9ORYZ; Uncharacterized protein
STRINGLPERR04G26050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.18e-91C2H2-like zinc finger protein