PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR04G25240.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 227aa MW: 23596.1 Da PI: 7.174 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.1 | 1.4e-36 | 55 | 113 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k+++l+cprC stntkfCyynnys+sqPr+fC+aCrryWt+GG+lr+vPvGg++r+ + LPERR04G25240.2 55 KQQQLECPRCRSTNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPVGGATRRAAA 113 7899***************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 5.8E-33 | 57 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.885 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-23 | 59 | 106 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 61 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MAPAVASSTL LSAAAAAAAS KKRPADSDAL PPIDSSPPPP QGDEEASTEK KQNQKQQQLE 60 CPRCRSTNTK FCYYNNYSTS QPRHFCRACR RYWTHGGTLR DVPVGGATRR AAAAKRRRVS 120 DDPSSSPSPP PPTSTTTTSD AYYADLPAAG AAGFPFLSDG AFLPQFGLAA AGVAAPAAFS 180 WQSVIADLYN CGIAPWDDGT AVAGAAACDG FTDIAGGLDL TWPPPGN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 114 | 118 | KRRRV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR04G25240.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448779.1 | 5e-70 | dof zinc finger protein DOF5.8 | ||||
TrEMBL | A0A0D9WB76 | 1e-161 | A0A0D9WB76_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G25240.1 | 1e-162 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66940.1 | 2e-27 | Dof family protein |