PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G24660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 713aa    MW: 80542.3 Da    PI: 4.9914
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G24660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06109130325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +++C +f++ G C  GdrC F H
  LPERR04G24660.1 109 MVPCYYFQK-GNCLKGDRCAFYH 130
                      789******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.692554IPR000571Zinc finger, CCCH-type
SMARTSM003560.00512653IPR000571Zinc finger, CCCH-type
PfamPF156636.1E-122782No hitNo description
PROSITE profilePS5010310.5965682IPR000571Zinc finger, CCCH-type
SMARTSM003560.555881IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4110131IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEADGVAAAT AEASARPLAP EEEALRRNTD CVYFLASPLT CKKGNECDFR HSEGARMNPR  60
DCWYWLNGNC LNLKCLFRHP PIDGMLGAPT PGIPAASSHY APYNSGKQMV PCYYFQKGNC  120
LKGDRCAFYH APQSAGYNPP EQVAKVSSLP LEQPQTQNDF LGIKDSVQPN NSIQQGAPIA  180
DDQGKTTVDR SMVNSARTST VAVPVSSNTM PWPKSDKAKN NMAALKESFT TSSGEDHPEC  240
YQNHPSMESN PMQDWNQNYE MPPADDLPQN SREADELLGE SSPGFDVLVD NDGDGAAYLH  300
DEEFAGDMYP VEDYEYAPAD FDVHAHHERE RFNGMDEQDQ IGHMYNGYER KRRRSSSERS  360
MERPFHSERR FLQRNREPVE MDGSDLRHRL RRRRINESSS AISPERNGEQ RRRDERYRER  420
DDRYRERAHG HSAHRDRHQG SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR  480
LSPVRRTEFQ GGRHREAGQH EERTQRRASE LALGARDADG QHSTRDAIDS HTFPNRKNLR  540
DSSKANGGVE PEVSLDFEGP KPLSVILQRK REATWGNGSS ACSPKGDKSA EVPHRQTTSL  600
PEAEKEGNNM ISSEEYKSGS GGEEFRDEGP IPAEGHGQSS SHGDRLEAED IIEVDPVGNQ  660
DADNYDQRED ASYYEAIEGE DYKSEDENAY EEDEEFDDDD DDDFARKVGA VFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353RKRRR
2349354RKRRRS
3473480RRRLRDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G24660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708570.0AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence.
GenBankHQ8588410.0HQ858841.1 Oryza sativa Japonica Group isolate UT1510 C3H-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636581.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D9WAZ70.0A0A0D9WAZ7_9ORYZ; Uncharacterized protein
STRINGLPERR04G24660.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]