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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR04G23580.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
SBP |
| Protein Properties |
Length: 411aa MW: 44213.8 Da PI: 7.7964 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR04G23580.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 128.6 | 2.3e-40 | 184 | 262 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
LPERR04G23580.1 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 262
6******************************98725689*************************************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MMNMPSAAAA NSCDEFGGYG NGATPPPPAL LPIMDQDAGG GGIQRDQHHH HHHHHQLGYN 60
LEPSSLALLP PSNAAAAATI AHAAPHDILQ FYPTSHYLTA AAGGGGGGNP YAHFAAAAGN 120
TFQSYYGQQP AAAGAAPEYY FPTLVSSAEE NMASFAATQL GLNLGYRTYF PPRGGYTYGH 180
HPPRCQAEGC KADLSSAKRY HRRHKVCEHH SKAPVVVTAG GLHQRFCQQC SRFHLLDEFD 240
DAKKSCRKRL ADHNRRRRKS KPSDGEHSAE KRRTPGNKSA TAKDKAGSSS KNAGGIGDGF 300
ETQLLGSAHM SKDQDQPMDL GEVVKEAVDP KGKASMQQQQ AHHSLHQQHG FPFPSSSGSC 360
LFPQSQAAVS STDNTSNIAQ VQEPSLAFHQ HHQHSNILQL GQAMFDLDFD H
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 254 | 272 | RRRRKSKPSDGEHSAEKRR |
| 2 | 255 | 260 | RRRKSK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB776991 | 0.0 | AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, cultivar: Nipponbare. |
| GenBank | AK068104 | 0.0 | AK068104.1 Oryza sativa Japonica Group cDNA clone:J013129G14, full insert sequence. |
| GenBank | JX462783 | 0.0 | JX462783.1 Oryza sativa Indica Group cultivar Teqing PAC1 mRNA, complete cds. |
| GenBank | JX462784 | 0.0 | JX462784.1 Oryza rufipogon strain C4 PAC1 mRNA, complete cds. |
