PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

AP2

Protein Properties

Length: 409aa MW: 42743 Da PI: 6.1853

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G23130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.3	2.2e-14	147	197	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g LPERR04G23130.1 147 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 197 79******.7**5553..2.26********************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	11.548	43	112	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-12	69	118	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.97E-9	76	113	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.1E-11	77	112	IPR001471	AP2/ERF domain
Pfam	PF00847	2.7E-10	147	197	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.9E-18	147	207	IPR016177	DNA-binding domain
CDD	cd00018	1.76E-25	147	207	No hit	No description
Gene3D	G3DSA:3.30.730.10	8.7E-17	148	205	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.067	148	205	IPR001471	AP2/ERF domain
SMART	SM00380	8.5E-33	148	211	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MWDLNDSPAP PPQPLSPSAD DSGASSSSAA AVDADDDSAA GAGAGGVVVV TRQFFPPAVP 60 GGDHPVSPGN ARSGDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSLEDYEDDL 120 KQMSNLTKEE FVHVLRRQST GFPRGSSKFR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT 180 EEEAARAYDR AAIKCNGKDA VTNFDPSIYA GEFEPAGAAA SANGDASGEH NLDLSLGSSA 240 GSKRGNLDGG DDEIAGGGGA GSDQRVPMAF DLDWQTAAAR STKAKFDQNS KHPQMPPVLQ 300 VSQLPFSPRH HQFMSNGDPG TAAGGLSLTI GAGVGGHWPH QQQHVGWGNA GGTSWPMPPH 360 PPPTLTPTPT NAAATATAAA ASSRFPPYIA TQASSWLQKN GFHSLTRPT

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MWDLNDSPAP PPQPLSPSAD DSGASSSSAA AVDADDDSAA GAGAGGVVVV TRQFFPPAVP  60
GGDHPVSPGN ARSGDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSLEDYEDDL  120
KQMSNLTKEE FVHVLRRQST GFPRGSSKFR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT  180
EEEAARAYDR AAIKCNGKDA VTNFDPSIYA GEFEPAGAAA SANGDASGEH NLDLSLGSSA  240
GSKRGNLDGG DDEIAGGGGA GSDQRVPMAF DLDWQTAAAR STKAKFDQNS KHPQMPPVLQ  300
VSQLPFSPRH HQFMSNGDPG TAAGGLSLTI GAGVGGHWPH QQQHVGWGNA GGTSWPMPPH  360
PPPTLTPTPT NAAATATAAA ASSRFPPYIA TQASSWLQKN GFHSLTRPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269\|PubMed:22408071}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G23130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082280	0.0	FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636848.1	1e-173	AP2-like ethylene-responsive transcription factor TOE3 isoform X1
Refseq	XP_015691597.1	1e-174	PREDICTED: floral homeotic protein APETALA 2-like
Swissprot	B8AVJ9	1e-176	APL25_ORYSI; APETALA2-like protein 5
TrEMBL	A0A0D9WAC9	0.0	A0A0D9WAC9_9ORYZ; Uncharacterized protein
STRING	LPERR04G23130.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5514	36	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	1e-74	AP2 family protein

Publications ? help Back to Top
Zhou Y, et al. Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell, 2012. 24(3): p. 1034-48 [PMID:22408071]