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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR04G23130.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
AP2 |
Protein Properties |
Length: 409aa MW: 42743 Da PI: 6.1853 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR04G23130.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 45.3 | 2.2e-14 | 147 | 197 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+++GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g
LPERR04G23130.1 147 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 197
79********.7******5553..2.26**********************99776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MWDLNDSPAP PPQPLSPSAD DSGASSSSAA AVDADDDSAA GAGAGGVVVV TRQFFPPAVP 60 GGDHPVSPGN ARSGDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSLEDYEDDL 120 KQMSNLTKEE FVHVLRRQST GFPRGSSKFR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT 180 EEEAARAYDR AAIKCNGKDA VTNFDPSIYA GEFEPAGAAA SANGDASGEH NLDLSLGSSA 240 GSKRGNLDGG DDEIAGGGGA GSDQRVPMAF DLDWQTAAAR STKAKFDQNS KHPQMPPVLQ 300 VSQLPFSPRH HQFMSNGDPG TAAGGLSLTI GAGVGGHWPH QQQHVGWGNA GGTSWPMPPH 360 PPPTLTPTPT NAAATATAAA ASSRFPPYIA TQASSWLQKN GFHSLTRPT
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FO082280 | 0.0 | FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product. |