PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G20430.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 221aa    MW: 22915.3 Da    PI: 9.6843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G20430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-192474155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++ a++ ++g
  LPERR04G20430.1 24 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDSAALHFRG 74
                     689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-212484No hitNo description
PfamPF008474.5E-132474IPR001471AP2/ERF domain
SMARTSM003808.7E-372588IPR001471AP2/ERF domain
PROSITE profilePS5103224.3952582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-312582IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222583IPR016177DNA-binding domain
PRINTSPR003671.5E-102637IPR001471AP2/ERF domain
PRINTSPR003671.5E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAPRNASEVA SAAADGGVVG GMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA  60
AARAYDSAAL HFRGPKAKTN FPVAFPHAAP PPPAMAMPMP MPPKSVVSPT SSTVESSSRD  120
TPVAEAQLPV AAPSLDLSLG MSAMVAAQPF LFLDPRVAVT VAVAAPVARR PAVVSVVKKE  180
VQARLEEQSD TGSSSSVVDA SPAVGVGLDL NLPPPAEEMA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-211985875Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G20430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066845e-84AL606684.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence.
GenBankAP0149605e-84AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126125e-84CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551625e-84CR855162.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152L12, complete sequence.
GenBankCU4069335e-84CU406933.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S101K22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633875.12e-78ethylene-responsive transcription factor 11
TrEMBLA0A0D9W9A11e-151A0A0D9W9A1_9ORYZ; Uncharacterized protein
STRINGLPERR04G20430.11e-152(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-23erf domain protein 9