PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRF

Protein Properties

Length: 377aa MW: 40838.6 Da PI: 7.6141

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G19760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	7.7e-25	114	158	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ LPERR04G19760.1 114 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 158 79****************************************996 PP
2	QLQ	59.1	1.3e-20	53	88	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++ LPERR04G19760.1 53 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 88 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-11	52	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.187	53	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.9E-14	53	87	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.517	114	158	IPR014977	WRC domain
Pfam	PF08879	3.8E-21	115	157	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAMPFASLSP AADHRSAPSS IFPFCRSSPL SAVGEEAQQH MMGARWMAAR PPPFTAAQYE 60 ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC 120 RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQQ LVAPHSQPPS AAPAAAAFQN 180 HSLYPAIVNG GGGGGGGGGG GGSFGLGSNA QLHMDNAASY STAAGAGNKD FRYSAYGVRP 240 LADEHSPLMT GAMDSSIDNS WRLLPSQTST FSVSSYPLLG NLSDLDQNTI CSMPKVEREP 300 LSFFGSDYVT VDSEKQENQT LRPFFDEWPK ARDSWPELTD DNSLATFSAT QLSISIPMAT 360 SDFSTTSSRS PNGIYSR

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAMPFASLSP AADHRSAPSS IFPFCRSSPL SAVGEEAQQH MMGARWMAAR PPPFTAAQYE  60
ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC  120
RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQQ LVAPHSQPPS AAPAAAAFQN  180
HSLYPAIVNG GGGGGGGGGG GGSFGLGSNA QLHMDNAASY STAAGAGNKD FRYSAYGVRP  240
LADEHSPLMT GAMDSSIDNS WRLLPSQTST FSVSSYPLLG NLSDLDQNTI CSMPKVEREP  300
LSFFGSDYVT VDSEKQENQT LRPFFDEWPK ARDSWPELTD DNSLATFSAT QLSISIPMAT  360
SDFSTTSSRS PNGIYSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G19760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ546693	0.0	FJ546693.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634332.1	0.0	growth-regulating factor 3 isoform X1
Refseq	XP_015634333.1	0.0	growth-regulating factor 3 isoform X2
Swissprot	Q6AWY6	0.0	GRF3_ORYSJ; Growth-regulating factor 3
TrEMBL	A0A0D9W8Z6	0.0	A0A0D9W8Z6_9ORYZ; Uncharacterized protein
STRING	LPERR04G19760.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2463	34	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-49	growth-regulating factor 5