PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19510.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 491aa    MW: 51588.6 Da    PI: 5.463
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.3e-31244302259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  LPERR04G19510.1 244 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 302
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109238304IPR003657WRKY domain
SuperFamilySSF1182903.4E-26241304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30241304IPR003657WRKY domain
SMARTSM007741.4E-37243303IPR003657WRKY domain
PfamPF031061.1E-25245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MCDYFLQRMD GDQAAGGDLT DIVRAGGGAM PGSVVVDLPS TAAEWHHHQL PADQPMLFQQ  60
PPQPPPSMSS DGCVGGGADI FGGDPFAGLV DPFSTDYSSG AADFLDAMPD AMSKVGFDTV  120
VGVAGGGGGG QMLDMSRKPL LPRGMAPLPA VGGGGLAPRV MAPSPLSPRA IRPYPAISAG  180
DMMKLGITAG QAAGCAIDAA VAGMQMSSPR SSGIKRRKNQ ARKVVCIPAP TAAGGRPSGE  240
VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ VERSRTDPNM LVITYTSEHN  300
HPWPTQRNAL AGSTRSHHSK NNSGGGSGSK SSQNEKTQQP NVKEEQKDQA TTTTATSTIT  360
TTNSASPVVV KEEETLAGSS SEALELERVM DTAAGVVDHS ELMDHVFSES YKPVIPESGQ  420
PDDFFADLAE LESDPMSLIF SKEYMEAKPS GGGDHAQEKA MAKELDPFDM LDWSTTTNSS  480
AGSSFEQGKR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-25218305280Disease resistance protein RRS1
5w3x_D7e-25218305280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109120.0AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652742.10.0PREDICTED: probable WRKY transcription factor 3
TrEMBLA0A0D9W8W90.0A0A0D9W8W9_9ORYZ; Uncharacterized protein
STRINGLPERR04G19510.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-69WRKY DNA-binding protein 35