PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB

Protein Properties

Length: 379aa MW: 41544.7 Da PI: 4.8856

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G19390.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.6e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +lv +++++G +W++ ++ g+ R++k+c++rw +yl LPERR04G19390.1 16 RGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	51.3	2.7e-16	69	131	1	48
TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++++lG++ +W++Ia++++ gRt++++k+ w+++l LPERR04G19390.1 69 RGNFTAEEEETIIKLHALLGNKyvpttgfnfqwimdsaRWSKIASCLP-GRTDNEIKNVWNTHL 131 89********************************************.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.17	11	67	IPR017930	Myb domain
SuperFamily	SSF46689	2.38E-25	13	127	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-13	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-15	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-24	17	70	IPR009057	Homeodomain-like
CDD	cd00167	1.00E-10	18	63	No hit	No description
SMART	SM00717	5.9E-13	68	133	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	13.033	68	135	IPR017930	Myb domain
Pfam	PF00249	6.5E-14	69	131	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-24	71	135	IPR009057	Homeodomain-like
CDD	cd00167	3.67E-10	71	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGKGRAPCCA KVGLNRGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IKLHALLGNK YVPTTGFNFQ WIMDSARWSK IASCLPGRTD 120 NEIKNVWNTH LKKRVSTPEK KKKKEGGNKS RKKTTCSDVL VPSPSPSSST TTTTTTNFSS 180 GDSAGEQSMS INTSKEEEED KIEIPMIDPC SFDFDMLVDP VVPETFFPAM TSSPASPCSS 240 TSRGGVDTNT LLDLPEIVDL GPELWSIIDG DGDGEAPPPP ASSNAAAACE ANATVAATEE 300 TKDWWLEDLE KELGLWGPTD EYHCHLGPQG QQPGRVDPPP LPAVVEDPVS CYFQAGPTAA 360 TWQGHEPSAV MTSYQMDYL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGKGRAPCCA KVGLNRGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHALLGNK YVPTTGFNFQ WIMDSARWSK IASCLPGRTD  120
NEIKNVWNTH LKKRVSTPEK KKKKEGGNKS RKKTTCSDVL VPSPSPSSST TTTTTTNFSS  180
GDSAGEQSMS INTSKEEEED KIEIPMIDPC SFDFDMLVDP VVPETFFPAM TSSPASPCSS  240
TSRGGVDTNT LLDLPEIVDL GPELWSIIDG DGDGEAPPPP ASSNAAAACE ANATVAATEE  300
TKDWWLEDLE KELGLWGPTD EYHCHLGPQG QQPGRVDPPP LPAVVEDPVS CYFQAGPTAA  360
TWQGHEPSAV MTSYQMDYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-24	14	135	25	128	MYB TRANSFORMING PROTEIN
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	152	KKKKKEGGNKSRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G19390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT070145	7e-97	BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653723.1	1e-167	PREDICTED: myb-related protein Zm1-like
Swissprot	P20024	1e-103	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A0D9W8V4	0.0	A0A0D9W8V4_9ORYZ; Uncharacterized protein
STRING	LPERR04G19390.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	2e-62	myb domain protein 63

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]