 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR04G19210.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
bHLH |
| Protein Properties |
Length: 348aa MW: 36696.4 Da PI: 6.7015 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR04G19210.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 43.2 | 6.8e-14 | 86 | 137 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ +s + + a+i+ A++++k+L+
LPERR04G19210.1 86 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YSHRGDQASIVGGAIDFVKELE 137
79****************************...*******************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MALDALCASA GDVLIYDTFN ASAAAAVVGA PPASFLFGGN AGGAAGTEAQ VAAAEEVEQK 60
PAAQAGRRKR RRRARSCKSR EDAESQRMTH IAVERNRRRQ MNEYLAVLRS LMPESYSHRG 120
DQASIVGGAI DFVKELEQLL QSLEAQKHTL LMQQQQPPPP PPPHQHHHTT TNCAAAAASD 180
TTNATSADQV TATAAAEPPP FARFFTYPQY VWRHHAAARV DGGGAAAEET SRGGAAAGVA 240
DIEVSLVETH ASVRVMAPRR PGQLLRMVTG LQALRLTVLH LNVTALASLA LYSISVKVEE 300
GCGMATVDDI AAAVHHVMCI IDAEAASQLL LAGEAGGNLV ADLPWPPS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 66 | 72 | RRKRRRR |
| 2 | 67 | 71 | RKRRR |
| 3 | 67 | 74 | RKRRRRAR |
| 4 | 86 | 97 | RMTHIAVERNRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL662981 | 8e-78 | AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence. |
| GenBank | AP014960 | 8e-78 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 8e-78 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | CR855235 | 8e-78 | CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence. |
