PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 637aa    MW: 71994.3 Da    PI: 5.7748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.31.1e-1122656352374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+a + +d+++ ++lL+++++++s +gd+ qRla++f++AL+arl++++s++y++l++++ts   +s+ l+a+kl+  ++P+ ++s+
  LPERR04G19190.1 265 TTLLIHCAQATAIDDHRNSNELLKQIRQRSSAYGDAGQRLAHCFANALEARLVGTGSNIYRSLAAKRTS---VSDILNAFKLYITACPFKRISN 355
                      689**************************************************************9999...********************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +   +aIl+a +g +r+Hi+D++i++G+QWp ++q +++Rp+gpps+RiTg++ p++g   ++ +e+tg+rL+++A+ ++vpfe+++ +a +++
  LPERR04G19190.1 356 FFSVEAILNASKGVTRLHIVDYGIQYGFQWPIFFQRISKRPGGPPSVRITGIDLPQPGfrPAQLIEATGHRLHEYARMFKVPFEYHA-IAAKWD 448
                      *********************************************************9*999*************************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++++e+++++++E l+Vn+ +++ +++de v+ +s+r +vLk++++++P+++++   +  +n++ Fl+rf eal yys+lfd+le++++r +e+
  LPERR04G19190.1 449 TIRVEDIKIDKDELLIVNCLFRMRNMMDEMVTDDSPRMQVLKTIRRMNPHLFIHGVVNGTYNAPFFLTRFKEALFYYSSLFDMLETTASRVDEN 542
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r  +Er l+gre+ nvvaceg+er+er et+++W++r  +aGFk++pl+e+++k+a++ ++k + + + v+e++++l++gWk+r ++++S W+
  LPERR04G19190.1 543 RLLIERDLFGREALNVVACEGTERVERPETYKQWQARNIRAGFKQLPLNEETVKKARYKVSKSYHRDFLVDEDKKWLLQGWKGRIIFALSTWE 635
                      ****************************************************************999*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.858238615IPR005202Transcription factor GRAS
PfamPF035143.6E-110265635IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MLDSGSYDDV DYGDLFSIPN PPAAPHLLNF PLQFSPSNGF HSSADDSHPS PAGIFGSTPS  60
PTSTTTELEN SEDLLESADD AVLAYINQFL LEDEEDESCP GSATSVEDRA LLAVEKPFVD  120
ILTAAKPQET CQESSWIDSC CDFTGNGGLL DIFRSTETTC QPVSCEFENN KRECTVHKGR  180
KNPHDDCLLF EEESRSKQLA VSEEETIRDM FDKVLLCNGD HCELRSPLPP EARNYGVYVK  240
GSGNKRGRKK GKSGASVEED AVDLTTLLIH CAQATAIDDH RNSNELLKQI RQRSSAYGDA  300
GQRLAHCFAN ALEARLVGTG SNIYRSLAAK RTSVSDILNA FKLYITACPF KRISNFFSVE  360
AILNASKGVT RLHIVDYGIQ YGFQWPIFFQ RISKRPGGPP SVRITGIDLP QPGFRPAQLI  420
EATGHRLHEY ARMFKVPFEY HAIAAKWDTI RVEDIKIDKD ELLIVNCLFR MRNMMDEMVT  480
DDSPRMQVLK TIRRMNPHLF IHGVVNGTYN APFFLTRFKE ALFYYSSLFD MLETTASRVD  540
ENRLLIERDL FGREALNVVA CEGTERVERP ETYKQWQARN IRAGFKQLPL NEETVKKARY  600
KVSKSYHRDF LVDEDKKWLL QGWKGRIIFA LSTWEPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4827063625380Protein SCARECROW
5b3h_A1e-4827063624379Protein SCARECROW
5b3h_D1e-4827063624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629810.0AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637021.10.0scarecrow-like protein 9
SwissprotQ9XE581e-165SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0D9W8S90.0A0A0D9W8S9_9ORYZ; Uncharacterized protein
STRINGLPERR04G19190.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-164SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]