PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G18060.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 819aa    MW: 88629.9 Da    PI: 5.6456
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G18060.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2081136156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe+lF+++++p+ + r+eL+k+l+L+ rqVk+WFqNrR+++k
  LPERR04G18060.3  81 KKRYHRHTPQQIQELESLFKECPHPDDKLRTELSKRLRLEPRQVKFWFQNRRTQMK 136
                      678899***********************************************998 PP
2START168.73.8e-533275612206
                      HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S.... CS
            START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla.... 77 
                      la +a++elvk+a+ +ep+W   s        e +n +e++ +f +  +     + +ea+r+sg+v+ +++a  ve+l+d  ++W+ ++     
  LPERR04G18060.3 327 LAMSAMDELVKMAQMGEPLWIPISseaaslvkETLNFEEYINTFLPCIGvrpegYVTEASRESGIVIiDDSAAIVETLMDEVRRWSDMFScmia 420
                      67899***************9888899*******************9999**************997256779********************* PP

                      EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECT CS
            START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksn 159
                      ka+t+e is+g      gal lm+aelq+lsplvp R+ +f+R+++ql +g+w++vdvS d+    +      +   + +++lpSg+++e+++n
  LPERR04G18060.3 421 KASTIEEISTGvvgtrnGALLLMQAELQVLSPLVPvRELTFLRFSKQLAEGVWAVVDVSADELMRDQGltsvsTNANMNCRRLPSGCVLEDTPN 514
                      ***********************************************************998765554444667788999************** PP

                      CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      g +kvtwveh++++++++h+l+r+l++sgla ga +w atlqrqce+
  LPERR04G18060.3 515 GFCKVTWVEHTEYDEASVHQLYRPLLRSGLALGAGRWIATLQRQCEC 561
                      *********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-2258139IPR009057Homeodomain-like
SuperFamilySSF466893.76E-2065136IPR009057Homeodomain-like
PROSITE profilePS5007117.45978138IPR001356Homeobox domain
SMARTSM003891.7E-1879142IPR001356Homeobox domain
CDDcd000861.06E-1880136No hitNo description
PfamPF000467.4E-1881136IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PROSITE profilePS5084841.976317564IPR002913START domain
SuperFamilySSF559614.85E-26321561No hitNo description
CDDcd088754.28E-105322560No hitNo description
SMARTSM002343.5E-40326561IPR002913START domain
PfamPF018525.6E-45327561IPR002913START domain
SuperFamilySSF559613.57E-18582785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MQFPYSGAAP GVFTSSPALS LALADAAGRD GGGGGKARDA SEAENESRSG SDHHDVISSG  60
GGGGDGNDDD DAEPGNTRKR KKRYHRHTPQ QIQELESLFK ECPHPDDKLR TELSKRLRLE  120
PRQVKFWFQN RRTQMKVSDR NQSTRLSINQ WCSSFSDYLI SFPRGDVDSN SAKAQMDRHE  180
NALLKQENDK LRTENLSMRE AMRNPVCGGC GGPAMLTDVP FHEHDLRVEN ARLRDELGRV  240
CALTAKFLGK PLSAMAPPLQ IHHQRHRPVS GSSSLELAVG GVMPSSTITD FAGAMSGSMG  300
TVITPIKSEA GVPSAMAGIG TSLFMELAMS AMDELVKMAQ MGEPLWIPIS SEAASLVKET  360
LNFEEYINTF LPCIGVRPEG YVTEASRESG IVIIDDSAAI VETLMDEVRR WSDMFSCMIA  420
KASTIEEIST GVVGTRNGAL LLMQAELQVL SPLVPVRELT FLRFSKQLAE GVWAVVDVSA  480
DELMRDQGLT SVSTNANMNC RRLPSGCVLE DTPNGFCKVT WVEHTEYDEA SVHQLYRPLL  540
RSGLALGAGR WIATLQRQCE CLAILMSSIA LPENDSAATI HPEGKRSMLK LARRMTENFC  600
AGVSTSSARD WSKMDGLTGN IGEDVHVMAR KSVDEPGTPP GVVLSAATSV WMPVMPEQLF  660
NFLRNERLRA EWDILSNGGP MQEVTSISKG QLDGNSVCLL KASPTSANQN SMLILQETCT  720
DTSGSMVVYA PVDIPAMHLV MSGGDSTCVA LLPSGFAILP AGPSTGPGHK MGGTLLTVAF  780
QILVNSQPTA KLTVESVETV NNLISCTINK IKTALHCDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G18060.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119140.0AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652658.10.0PREDICTED: homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A0D9W8C90.0A0A0D9W8C9_9ORYZ; Uncharacterized protein
STRINGLPERR04G18060.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]