PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G18060.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HD-ZIP

Protein Properties

Length: 834aa MW: 90488 Da PI: 5.9622

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G18060.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.7e-20	81	136	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p+ + r+eL+k+l+L+ rqVk+WFqNrR+++k LPERR04G18060.2 81 KKRYHRHTPQQIQELESLFKECPHPDDKLRTELSKRLRLEPRQVKFWFQNRRTQMK 136 678899***********************************************998 PP
2	START	152.9	2.6e-48	327	576	2	206
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla.... 77 la +a++elvk+a+ +ep+W s e +n +e++ +f + + + +ea+r+sg+v+ +++a ve+l+d ++W+ ++ LPERR04G18060.2 327 LAMSAMDELVKMAQMGEPLWIPISseaaslvkETLNFEEYINTFLPCIGvrpegYVTEASRESGIVIiDDSAAIVETLMDEVRRWSDMFScmia 420 67899*************9888899***************9999**********997256779***************** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECT CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksn 159 ka+t+e is+g gal lm+aelq+lsplvp R+ +f+R+++ql +g+w++vdvS d+ + + + +++lpSg+++e+++n LPERR04G18060.2 421 KASTIEEISTGvvgtrnGALLLMQAELQVLSPLVPvRELTFLRFSKQLAEGVWAVVDVSADELMRDQGltsvsTNANMNCRRLPSGCVLEDTPN 514 *******************************************************998765554444667788999********** PP CE...............EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 gh...............skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g kvtwveh++++++++h+l+r+l++sgla ga +w atlqrqce+ LPERR04G18060.2 515 GFckvqkglqpriqdyfRKVTWVEHTEYDEASVHQLYRPLLRSGLALGAGRWIATLQRQCEC 576 **********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-22	58	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.85E-20	65	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	78	138	IPR001356	Homeobox domain
SMART	SM00389	1.7E-18	79	142	IPR001356	Homeobox domain
CDD	cd00086	1.10E-18	80	136	No hit	No description
Pfam	PF00046	7.6E-18	81	136	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.697	317	579	IPR002913	START domain
SuperFamily	SSF55961	5.77E-22	321	576	No hit	No description
CDD	cd08875	2.09E-101	322	575	No hit	No description
SMART	SM00234	1.0E-34	326	576	IPR002913	START domain
Pfam	PF01852	3.2E-40	327	576	IPR002913	START domain
SuperFamily	SSF55961	5.63E-18	597	800	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 834 aa Download sequence Send to blast
MQFPYSGAAP GVFTSSPALS LALADAAGRD GGGGGKARDA SEAENESRSG SDHHDVISSG 60 GGGGDGNDDD DAEPGNTRKR KKRYHRHTPQ QIQELESLFK ECPHPDDKLR TELSKRLRLE 120 PRQVKFWFQN RRTQMKVSDR NQSTRLSINQ WCSSFSDYLI SFPRGDVDSN SAKAQMDRHE 180 NALLKQENDK LRTENLSMRE AMRNPVCGGC GGPAMLTDVP FHEHDLRVEN ARLRDELGRV 240 CALTAKFLGK PLSAMAPPLQ IHHQRHRPVS GSSSLELAVG GVMPSSTITD FAGAMSGSMG 300 TVITPIKSEA GVPSAMAGIG TSLFMELAMS AMDELVKMAQ MGEPLWIPIS SEAASLVKET 360 LNFEEYINTF LPCIGVRPEG YVTEASRESG IVIIDDSAAI VETLMDEVRR WSDMFSCMIA 420 KASTIEEIST GVVGTRNGAL LLMQAELQVL SPLVPVRELT FLRFSKQLAE GVWAVVDVSA 480 DELMRDQGLT SVSTNANMNC RRLPSGCVLE DTPNGFCKVQ KGLQPRIQDY FRKVTWVEHT 540 EYDEASVHQL YRPLLRSGLA LGAGRWIATL QRQCECLAIL MSSIALPEND SAATIHPEGK 600 RSMLKLARRM TENFCAGVST SSARDWSKMD GLTGNIGEDV HVMARKSVDE PGTPPGVVLS 660 AATSVWMPVM PEQLFNFLRN ERLRAEWDIL SNGGPMQEVT SISKGQLDGN SVCLLKASPT 720 SANQNSMLIL QETCTDTSGS MVVYAPVDIP AMHLVMSGGD STCVALLPSG FAILPAGPST 780 GPGHKMGGTL LTVAFQILVN SQPTAKLTVE SVETVNNLIS CTINKIKTAL HCDV

Sequence ? help Back to Top

Protein Sequence Length: 834 aa Download sequence Send to blast

MQFPYSGAAP GVFTSSPALS LALADAAGRD GGGGGKARDA SEAENESRSG SDHHDVISSG  60
GGGGDGNDDD DAEPGNTRKR KKRYHRHTPQ QIQELESLFK ECPHPDDKLR TELSKRLRLE  120
PRQVKFWFQN RRTQMKVSDR NQSTRLSINQ WCSSFSDYLI SFPRGDVDSN SAKAQMDRHE  180
NALLKQENDK LRTENLSMRE AMRNPVCGGC GGPAMLTDVP FHEHDLRVEN ARLRDELGRV  240
CALTAKFLGK PLSAMAPPLQ IHHQRHRPVS GSSSLELAVG GVMPSSTITD FAGAMSGSMG  300
TVITPIKSEA GVPSAMAGIG TSLFMELAMS AMDELVKMAQ MGEPLWIPIS SEAASLVKET  360
LNFEEYINTF LPCIGVRPEG YVTEASRESG IVIIDDSAAI VETLMDEVRR WSDMFSCMIA  420
KASTIEEIST GVVGTRNGAL LLMQAELQVL SPLVPVRELT FLRFSKQLAE GVWAVVDVSA  480
DELMRDQGLT SVSTNANMNC RRLPSGCVLE DTPNGFCKVQ KGLQPRIQDY FRKVTWVEHT  540
EYDEASVHQL YRPLLRSGLA LGAGRWIATL QRQCECLAIL MSSIALPEND SAATIHPEGK  600
RSMLKLARRM TENFCAGVST SSARDWSKMD GLTGNIGEDV HVMARKSVDE PGTPPGVVLS  660
AATSVWMPVM PEQLFNFLRN ERLRAEWDIL SNGGPMQEVT SISKGQLDGN SVCLLKASPT  720
SANQNSMLIL QETCTDTSGS MVVYAPVDIP AMHLVMSGGD STCVALLPSG FAILPAGPST  780
GPGHKMGGTL LTVAFQILVN SQPTAKLTVE SVETVNNLIS CTINKIKTAL HCDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	81	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G18060.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111914	0.0	AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence.
GenBank	AK112099	0.0	AK112099.1 Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652658.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC4
Swissprot	Q7Y0V9	0.0	ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBL	A0A0D9W8C8	0.0	A0A0D9W8C8_9ORYZ; Uncharacterized protein
STRING	LPERR04G18060.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wei J, et al. GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7. Plant Sci., 2016. 252: p. 133-143 [PMID:27717449] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]