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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR04G17400.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 467aa MW: 50955.2 Da PI: 4.644 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR04G17400.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.5 | 2.3e-13 | 275 | 322 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++h + ErrRR+++N+ f L++++P+ K++Ka+iL +++ Y+k+Lq
LPERR04G17400.1 275 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELQ 322
5899***********************66......******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MTYAFRPGQG LPGKSFESNE FVWLSNAHSA DRKTFQRALI AKTIVCVPFM HGVLELGTTD 60 RVLEDPALVD RVAASFWETP FRVVCSPEAP SSSPPPNDET ADAADIVFED LDNDNAVRET 120 TTVPAEESNE IGRHREVAEL ESNGANDQQI TMDIGEIYSL CEELDVDVDV VRTLDDDSSW 180 AVDPWSFQLV PTLSSPPDAA GVATHADDIA ALDGSCRSSS CFVEWKKTPN SDEVAVPLTS 240 GGDSQRLLKK SVAGGAWMNN GGGGSAAMTQ GSSIKNHVMS ERRRREKLNE MFLILKSVVP 300 SIHKVDKASI LAETIAYLKE LQKRVEELES NNEPSRRPIE TRRRRCREVT RKKAYAGAKR 360 KASPELVSGG SDDDDDGGTD GERHCVSNVN VTIMENKEVL LEMQCQWKEL LMARVFDAIK 420 GVFLDVLSVQ ASTSDGLLGL KIQAKFANSA AVEPGVITEA LRKAIAS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 280 | 285 | ERRRRE |
2 | 281 | 286 | RRRREK |
3 | 341 | 352 | RRRRCREVTRKK |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Publications
? help Back to Top |
- Pattanaik S,Xie CH,Yuan L
The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] - Huang ZA, et al.
The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] - Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] - Li P, et al.
Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]
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