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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G17390.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 53137.2 Da PI: 4.8385 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.1e-12 | 392 | 439 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++ + f L++l+P+ K+ Ka+iL +++ YIk+L+ LPERR04G17390.2 392 KNHVMSERRRREKLSEMFLILKSLVPSiH------KMHKASILAETITYIKELE 439 5899***********************66......****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.0E-52 | 20 | 202 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.523 | 389 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-17 | 392 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.65E-14 | 392 | 443 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-17 | 393 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 393 | 439 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-14 | 395 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MASAPPVREE PVQPGTKPFR SQLAAAVRSI SWSYAIFWSI STSRPGVLTW NDGFYNGEVK 60 TRKLSNSGDL TANEIILQRS EQLRELYSSL LSGECNHRAR RPVAALSPED LGDTEWYYVI 120 CMTYVFRPGQ GLPGRSFASN GSVWLYNAQS ADSRTFARAL LAKNASIQTI ICIPFMSGVL 180 ELGTTDLVME QPNLVDRITA SFGEPGFSAC LEVPNSSPSP NEVGDADDIV LEDLIDNAIE 240 EEQMIQPGEH ELGNAVVVAD QHVSNAYDGL EQITMEIDEL YSLCKELDMD TSLSLEHDNS 300 YWPMNIGSFQ LVRTFSPVAM DATAAAAVSD VDGVASITSC FMTWKRANLD EIPVSQTGIE 360 SQKLLKKAVD GGTWMNNNGR GSVAMTQKSS IKNHVMSERR RREKLSEMFL ILKSLVPSIH 420 KMHKASILAE TITYIKELEK RVKELEFNSE PSHQRSTKVP SNMNVIVIDK IVHLDVCLFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-19 | 5 | 202 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 397 | 402 | ERRRRE |
2 | 398 | 403 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G17390.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653663.1 | 0.0 | PREDICTED: anthocyanin regulatory R-S protein-like | ||||
Refseq | XP_015692285.1 | 0.0 | PREDICTED: anthocyanin regulatory R-S protein-like | ||||
Swissprot | P13526 | 1e-139 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | A0A0D9W828 | 0.0 | A0A0D9W828_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G17390.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-77 | bHLH family protein |
Publications ? help Back to Top | |||
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