PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G17380.3

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 357aa MW: 39141.4 Da PI: 4.6584

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G17380.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.4e-13	272	318	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h + Er RR+++N+ f L++l+P+ K++Ka++L +++ YIk+L+ LPERR04G17380.3 272 KHVMSERSRREKLNEMFLILKSLVPSiH------KMDKASTLAETITYIKELE 318 799*********************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.5E-26	1	81	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.196	268	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-16	271	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.01E-15	271	319	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-15	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	272	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-14	274	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MTYVFRPGQG LPGRSFASNG FVWLCNAQST DSKTFARALL AKSASIQTIV CVPFMSGVLE 60 LGTTDLVMEE PNLVDRITTS FREPRFSVCL EVPDSSPSLN EMGDADNIVL EDLIDNAIEE 120 EQMIQPAEHE LGNAVVVADQ HVSNANNGLE QITMEIDELY SLCEEVDLDN ALSLEHFNSY 180 WPMNTGSFQP VRTSSPEAMA ATTAAAASDV HGVVSITSCF MTWKRANLDE VAISHTGIES 240 QKLLKKTVDG GTWMNNNGRG SVAVTQESSI KKHVMSERSR REKLNEMFLI LKSLVPSIHK 300 MDKASTLAET ITYIKELEKR ASTPDGLFRL KIQAKFACSG EVAPGRIIEA FQNAIGI

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MTYVFRPGQG LPGRSFASNG FVWLCNAQST DSKTFARALL AKSASIQTIV CVPFMSGVLE  60
LGTTDLVMEE PNLVDRITTS FREPRFSVCL EVPDSSPSLN EMGDADNIVL EDLIDNAIEE  120
EQMIQPAEHE LGNAVVVADQ HVSNANNGLE QITMEIDELY SLCEEVDLDN ALSLEHFNSY  180
WPMNTGSFQP VRTSSPEAMA ATTAAAASDV HGVVSITSCF MTWKRANLDE VAISHTGIES  240
QKLLKKTVDG GTWMNNNGRG SVAVTQESSI KKHVMSERSR REKLNEMFLI LKSLVPSIHK  300
MDKASTLAET ITYIKELEKR ASTPDGLFRL KIQAKFACSG EVAPGRIIEA FQNAIGI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G17380.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653663.1	1e-124	PREDICTED: anthocyanin regulatory R-S protein-like
Refseq	XP_015692285.1	1e-124	PREDICTED: anthocyanin regulatory R-S protein-like
Swissprot	P13526	8e-77	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A0D9W826	0.0	A0A0D9W826_9ORYZ; Uncharacterized protein
STRING	LPERR04G17380.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-37	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]