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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR04G17380.3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 357aa MW: 39141.4 Da PI: 4.6584 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR04G17380.3 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.7 | 4.4e-13 | 272 | 318 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h + Er RR+++N+ f L++l+P+ K++Ka++L +++ YIk+L+
LPERR04G17380.3 272 KHVMSERSRREKLNEMFLILKSLVPSiH------KMDKASTLAETITYIKELE 318
799***********************66......****************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MTYVFRPGQG LPGRSFASNG FVWLCNAQST DSKTFARALL AKSASIQTIV CVPFMSGVLE 60 LGTTDLVMEE PNLVDRITTS FREPRFSVCL EVPDSSPSLN EMGDADNIVL EDLIDNAIEE 120 EQMIQPAEHE LGNAVVVADQ HVSNANNGLE QITMEIDELY SLCEEVDLDN ALSLEHFNSY 180 WPMNTGSFQP VRTSSPEAMA ATTAAAASDV HGVVSITSCF MTWKRANLDE VAISHTGIES 240 QKLLKKTVDG GTWMNNNGRG SVAVTQESSI KKHVMSERSR REKLNEMFLI LKSLVPSIHK 300 MDKASTLAET ITYIKELEKR ASTPDGLFRL KIQAKFACSG EVAPGRIIEA FQNAIGI
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Publications
? help Back to Top |
- Pattanaik S,Xie CH,Yuan L
The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] - Huang ZA, et al.
The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] - Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] - Li P, et al.
Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]
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