PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 478aa    MW: 52790.7 Da    PI: 4.6573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13393439455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h + Er RR+++N+ f  L++l+P+        K++Ka++L +++ YIk+L+
  LPERR04G17380.1 393 KHVMSERSRREKLNEMFLILKSLVPSiH------KMDKASTLAETITYIKELE 439
                      799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5420202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.196389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-16392444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-15392440No hitNo description
PfamPF000101.8E-10393439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-14395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MASAPPDQEE PLQPGTKPFR NQLAAVVRSI SWSYAIFWSI STSRPGVLTW NDGFYNGEVK  60
TRKLSNSADL TADEIILQRS EQLRELYSSL LSGECDHRAR RPVTALSPED LGDTEWYYVI  120
CMTYVFRPGQ GLPGRSFASN GFVWLCNAQS TDSKTFARAL LAKSASIQTI VCVPFMSGVL  180
ELGTTDLVME EPNLVDRITT SFREPRFSVC LEVPDSSPSL NEMGDADNIV LEDLIDNAIE  240
EEQMIQPAEH ELGNAVVVAD QHVSNANNGL EQITMEIDEL YSLCEEVDLD NALSLEHFNS  300
YWPMNTGSFQ PVRTSSPEAM AATTAAAASD VHGVVSITSC FMTWKRANLD EVAISHTGIE  360
SQKLLKKTVD GGTWMNNNGR GSVAVTQESS IKKHVMSERS RREKLNEMFL ILKSLVPSIH  420
KMDKASTLAE TITYIKELEK RASTPDGLFR LKIQAKFACS GEVAPGRIIE AFQNAIGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-2152032193Transcription factor MYC3
4rqw_B7e-2152032193Transcription factor MYC3
4rs9_A7e-2152032193Transcription factor MYC3
4yz6_A7e-2152032193Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653663.10.0PREDICTED: anthocyanin regulatory R-S protein-like
RefseqXP_015692285.10.0PREDICTED: anthocyanin regulatory R-S protein-like
SwissprotP135261e-137ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0D9W8240.0A0A0D9W824_9ORYZ; Uncharacterized protein
STRINGLPERR04G17380.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-76bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]