PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 361aa    MW: 37342 Da    PI: 9.52
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.37.1e-41107184178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC++ l+ +keyhrrhkvCe+h+kap v+v+g eqrfCqqCsrfh l efD++k+sCrrrLa+hnerrr+++a
  LPERR04G17030.1 107 RCQVEGCDVTLTGVKEYHRRHKVCEMHAKAPRVVVHGAEQRFCQQCSRFHVLAEFDDTKKSCRRRLAGHNERRRRSNA 184
                      6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-34103169IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.753105182IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-39106185IPR004333Transcription factor, SBP-box
PfamPF031101.4E-32108181IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEGNGGGGAP TPLGVGMHWA PVTSSPSPQP FLPPPPCHPG QMQQQQGLTC LKLGKRPCFW  60
GGSDAAAAAA AGNVAQGSDG STGGGAAAAE GKRKEKAASA GVPAVPRCQV EGCDVTLTGV  120
KEYHRRHKVC EMHAKAPRVV VHGAEQRFCQ QCSRFHVLAE FDDTKKSCRR RLAGHNERRR  180
RSNANEAMAR GSAHPHGMPA LGHGFPPYGL PASSAGALSL LSSARATTGP WLIPTPDISA  240
RSSAALDELI AQNRAALLSW QFFSERSPPP GSRPTGRPPA ETPPAGWHAH LQARPPRHES  300
PAAASGHVTL DLMQSTTEAG AAGAPFRPVP ARPAKDGGGG GDAGCTSDAW TSSPMEGARV  360
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3099181284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635344.11e-179squamosa promoter-binding-like protein 7
SwissprotQ01JD10.0SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBLA0A0D9W7Y00.0A0A0D9W7Y0_9ORYZ; Uncharacterized protein
STRINGLPERR04G17030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.42e-30squamosa promoter binding protein-like 10