![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR04G16900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 24467.9 Da PI: 6.2414 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 57 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g LPERR04G16900.1 57 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 106 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-19 | 57 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-31 | 57 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-34 | 57 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 57 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 57 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.38E-28 | 58 | 115 | No hit | No description |
PRINTS | PR00367 | 1.0E-10 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MDNTHEPSSP ASHDTTTSSS TSSSSSSSST SSSSCAAVAK KKRARNGNGN DEGRHPTYRG 60 VRMRSWGKWV SEIREPRKKS RIWLGTFATA EMAARAHDVA ALAIKGARAA HLNFPGLAHL 120 LPRPASSAPK DVQAAALLAA AADFPFPSPS DDGNGSANAK SPDADASPSQ QQQQQQPSAP 180 VDPDSELFDL PDLLLDLRYE SSSSLSCGAS WAVDDGVFRL EEPMPMLWDY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 55 | 115 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR04G16900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108473 | 1e-108 | AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence. | |||
GenBank | AL663000 | 1e-108 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. | |||
GenBank | AP014960 | 1e-108 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258282 | 1e-108 | AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634439.1 | 3e-67 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q8LBQ7 | 3e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0D9W7W7 | 1e-165 | A0A0D9W7W7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G16900.1 | 1e-166 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-42 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|