 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR04G16870.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
MYB |
| Protein Properties |
Length: 456aa MW: 49743.6 Da PI: 6.2957 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR04G16870.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 24 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+W++eEde l + v+ +G++ W++I +++g+ Rt+k+c++rw +
LPERR04G16870.1 24 KGPWSEEEDEVLREHVRTHGPREWSSIRSKVGLPRTGKSCRLRWVN 69
79******************************99**********87 PP
|
| 2 | Myb_DNA-binding | 39.6 | 1.2e-12 | 79 | 119 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++T+ E+ +++ +++G++ W++Ia +++ gRt++++k++w
LPERR04G16870.1 79 KFTANEEREVIELQARYGNK-WARIATHLQ-GRTDNDVKNFWS 119
79******************.*********.***********5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MAPAPGGVRG RGGGRGGGEE EVRKGPWSEE EDEVLREHVR THGPREWSSI RSKVGLPRTG 60
KSCRLRWVNK LRPNLKSCKF TANEEREVIE LQARYGNKWA RIATHLQGRT DNDVKNFWST 120
RQKRLARLLR VPLCARSKKQ KNSSRGKALA SFPKSEAEPE TAMVHQGSAC LNQASLEGNS 180
SYCQYSEAAP FVKYQNVAQA PYDQACAGSF AFKGALPPLA AGEGSSSAAG EVSSSNAAQL 240
APLMLFDHPA YPRRLLRTPV NAWSDTEKNS NKGKEPSSSL ESETAMIHQD PTYPDQASFE 300
GYSFGCQCYE DELYVDYWNA AQAHDPAWSG SFSFEGAQEL PQQLLPPAAG EASSSSAAQF 360
APPLPFDHPG YPLINFPGVS HALVGAMNDL TFHEMLPMMQ SAPMIVPFVC MEFAHGAVKD 420
EPRDAFNDLP PVMSNDTVDQ LPPAPPPSPA SSGDEF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL663000 | 2e-42 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. |
| GenBank | AL731613 | 2e-42 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. |
| GenBank | AP014960 | 2e-42 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 2e-42 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | CR855218 | 2e-42 | CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence. |
