PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G16440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30098.6 Da    PI: 4.8338
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G16440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1967120456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  LPERR04G16440.1  67 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 120
                      458**************9899********************************9 PP
2HD-ZIP_I/II126.21.4e-4065158193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy++L+++ydal+++ e+L++e+ +L+++l+e
  LPERR04G16440.1  65 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYASLRSKYDALHSRVESLKQEKLSLTSQLHE 158
                      69******************999*******************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-1942124IPR009057Homeodomain-like
PROSITE profilePS5007117.7561122IPR001356Homeobox domain
SMARTSM003898.6E-2064126IPR001356Homeobox domain
CDDcd000861.62E-1866123No hitNo description
Gene3DG3DSA:1.10.10.608.6E-2067129IPR009057Homeodomain-like
PfamPF000464.1E-1767120IPR001356Homeobox domain
PRINTSPR000316.8E-793102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000316.8E-7102118IPR000047Helix-turn-helix motif
PfamPF021831.6E-14122163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVDRAASTSW NQSIAMDRGD HLQLLMPPPA PVVHHQQLCM PMMTADEQSY MMGVGGVAPA  60
ARGGERKRRF TEEQIRSLES MFHAHHAKLE PREKAELARE LGLQPRQVAI WFQNKRARWR  120
SKQLEHDYAS LRSKYDALHS RVESLKQEKL SLTSQLHELR ERLREREERS SVGNGAATTA  180
ASSSSCNGSG SEEEVDDDDK RNVAAGCLDL EPPESCVLGG ATCATPDVSV ESDQCDDQLD  240
YDEGLIPESF CATPELWEPW PLIEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G16440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244400.0AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652595.11e-125PREDICTED: homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK01e-120HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-120HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A0D9W7Q10.0A0A0D9W7Q1_9ORYZ; Uncharacterized protein
STRINGLPERR04G16440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-34homeobox 7