 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR04G16190.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
YABBY |
| Protein Properties |
Length: 262aa MW: 27802.4 Da PI: 7.7843 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR04G16190.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 208.2 | 3e-64 | 25 | 214 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee...................lleel 75
eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+ ++l+ + l + ++e+
LPERR04G16190.1 25 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlpaaaNQLPFGQALLS----PtsphglldevpsfqapqslMTEQA 114
579******************************************98873333323333333333....2455699999999987765433333 PP
YABBY 76 kveeenlksnvekeesastsvssekl......senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
+ ++++s + +s ++++++++ s +++ + p+ + ++r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWa
LPERR04G16190.1 115 SPNVSSITSSN---SSCANNTPATSMasaankSAQREPQQPKSAQsaTNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 205
33333333322...22223333333334443344444455555554589********************************************* PP
YABBY 162 hfPkihfgl 170
hfP+ihfgl
LPERR04G16190.1 206 HFPHIHFGL 214
*******97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:0010154 | Biological Process | fruit development |
| GO:0010158 | Biological Process | abaxial cell fate specification |
| GO:1902183 | Biological Process | regulation of shoot apical meristem development |
| GO:2000024 | Biological Process | regulation of leaf development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MMSSAAETFS LDHLAQHQPP PPLAEQEQLC YVHCNFCDTI LAVGVPCSSL FKTVTVRCGH 60
CANLLSVNLR GLLLPAAANQ LPFGQALLSP TSPHGLLDEV PSFQAPQSLM TEQASPNVSS 120
ITSSNSSCAN NTPATSMASA ANKSAQREPQ QPKSAQSATN RTSEKRQRVP SAYNRFIKDE 180
IQRIKASNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL KKAGIQSQDG PGECMLFKDG 240
LYAAAAAAAA ATAASSMGVT PF
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. |
| UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB274017 | 0.0 | AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds. |
| GenBank | AK070205 | 0.0 | AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence. |
