 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR04G11740.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
NAC |
| Protein Properties |
Length: 358aa MW: 38400.2 Da PI: 7.3729 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR04G11740.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 176.5 | 7.5e-55 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtdeel+++yL+kk+++ ++ + +++e+d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++
LPERR04G11740.1 14 LPPGFRFHPTDEELITHYLAKKIADARFAA-LAVAEADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR 106
79*************************999.67***************8778899*************************************** PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++lvg+kktLvfy+grapkgek+ Wvmheyrl
LPERR04G11740.1 107 -GKALVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 139
.99*****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MERADHQGQA AMDLPPGFRF HPTDEELITH YLAKKIADAR FAALAVAEAD LNKCEPWDLP 60
SLARMGEKEW YFFCLKDRKY PTGLRTNRAT ESGYWKATGK DKDIFRGKAL VGMKKTLVFY 120
TGRAPKGEKS GWVMHEYRLH AKLHPAPKPM SASKNEWVLC RVFKKSLLEV GGSAGAKKAA 180
AAAASTSSVA DEIAMSSVLP PLMDMSGGGG VDAATTAHVT CFSNNALEGQ FFNPTAVVHG 240
HGGGGGGEDH HHHHQHGHLM AAASSPFMAS SFAQYGQLHH GVSLVQLLES CNGYGGLVDM 300
TAAAAAVGGQ HQHQLAACGG ERERLSASQD TGLTSDVNPE ISSSSGQRFD HEAALWSY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-56 | 12 | 165 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-56 | 12 | 165 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-56 | 12 | 165 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-56 | 12 | 165 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 3e-56 | 12 | 165 | 18 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-56 | 12 | 165 | 15 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-56 | 12 | 165 | 15 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028181 | 1e-180 | AB028181.1 Oryza sativa mRNA for OsNAC2 protein, complete cds. |
| GenBank | AK061745 | 1e-180 | AK061745.1 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence. |
| GenBank | AK071020 | 1e-180 | AK071020.1 Oryza sativa Japonica Group cDNA clone:J023080H09, full insert sequence. |
| GenBank | AK104626 | 1e-180 | AK104626.1 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence. |
| GenBank | CT828636 | 1e-180 | CT828636.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012A02, full insert sequence. |
| GenBank | CT830107 | 1e-180 | CT830107.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence. |
| GenBank | DQ520641 | 1e-180 | DQ520641.1 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds. |
