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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G10650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 21393.2 Da PI: 6.273 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr++k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g LPERR04G10650.1 17 SQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 67 78*****998.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.8E-12 | 17 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-30 | 17 | 75 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-22 | 17 | 76 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.709 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-37 | 18 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEIRSSPTMS AAGCGISQYR GVRRRKWGKW VSEIRQPGTK TRIWLGSFES AEMAAVAHDV 60 AALRLRGRDA QLNFPGSVDR LPRPASSRPG DIRAAAAEAA DRVRRDPALA MAMTTTPSPP 120 ASSSRWAGGV AAPPRVEQVG GGSDEEFELD SPRLWAEMAE AMLLDPPIWA DQPTWAVDVS 180 EMEVAHCWAH GSLWDAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 17 | 79 | 4 | 67 | ATERF1 |
3gcc_A | 1e-16 | 17 | 79 | 4 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G10650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194473.1 | 2e-71 | ethylene-responsive transcription factor ERF021-like | ||||
TrEMBL | A0A0D9W5E1 | 1e-137 | A0A0D9W5E1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G10650.1 | 1e-138 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 4e-25 | ERF family protein |