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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G10530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 435aa MW: 45896.8 Da PI: 5.3023 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 120 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ H+r+H LPERR04G10530.1 120 FPCGVCRREFGSRKGVDGHMRVH 142 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.72 | 120 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.084 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 122 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.85 | 243 | 272 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7 | 243 | 267 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 245 | 267 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.1 | 250 | 263 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.68E-5 | 294 | 323 | No hit | No description |
Pfam | PF13912 | 8.8E-6 | 296 | 320 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.162 | 296 | 323 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.5 | 296 | 318 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 298 | 318 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MEGDESSSNR RRDPPVEEGK ICRGGYYDSG SETEDDDDGG GGGRYVFQPR RVRVDDEEEG 60 VITTGCKRRR LEDVLASSSP PTPSSGYDSE GTISDSDHGG GGGGGGVAAS VAPRPRPVAF 120 PCGVCRREFG SRKGVDGHMR VHRQEEKKEK EKNPPVARLA IGKNKKKNSN DARDEVNVAF 180 AAPNAYEVAD DDDNSDRMAI LMVAAVAEPS PPPPQRPMAT AAAVANVVVG AHRHAAAAQG 240 PPYRCNRVDC DKEYATHQAL GGHIAGHVTK EKQEAAGGGG SGGGGDAKPA GEVRKHLCGV 300 CGQEFLTGVA LGGHMRKHYD GKVIVKRKKK VELPPAEPNT EAEVEALPPV TEPKTEVEME 360 ALPPAPEAKT EAEASPQPPP PAPAPAEQKV EVVAEQRSEE AAPVAAPVNV RRTVRIFGVD 420 LEKPADAEEQ DDGGH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 70 | KRRRL |
2 | 161 | 167 | GKNKKKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G10530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9W5C5 | 0.0 | A0A0D9W5C5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G10530.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13928 | 12 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43170.1 | 9e-12 | zinc-finger protein 3 |