PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10260.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 340aa    MW: 38052.7 Da    PI: 10.0576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10260.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06244267126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+ e Cr++++   C + ++C+FaH+
  LPERR04G10260.3 244 YGVEVCRDYLK-NMCTR-ESCRFAHP 267
                      899********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.7694122IPR000571Zinc finger, CCCH-type
SMARTSM003560.0595121IPR000571Zinc finger, CCCH-type
PfamPF146080.022100120No hitNo description
SMARTSM003560.21129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836129156IPR000571Zinc finger, CCCH-type
PfamPF146083.5141154No hitNo description
PROSITE profilePS5010311.958171197IPR000571Zinc finger, CCCH-type
SMARTSM003560.043172196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4242267IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013243268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.563243269IPR000571Zinc finger, CCCH-type
PfamPF146080.0013249267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MASAEIPNSD SAAAEIPNPD SAAAGSPSPP LPPRKRRLSH TPSPSRSRSP GARRSRSRSR  60
SRSRSRSRSR SRSRSRSRSR SPRYHDGKRR RHNDLTVEVC RDFLRDRCTR ADVECKYAHP  120
HHSVSVDRDS KVTACADSLR NNCFRGRTCR YYHPPPHIQE SLLRSIGMED PKMKVVCQDF  180
LRGRCDRRSC RYSHVMAHPM PPPPMRDIPM QFHDMVYVPP PAPLGVSMMM PPPSAPAAFA  240
GNNYGVEVCR DYLKNMCTRE SCRFAHPDSN NEFAVILSEE NAIDLHVAFT IHLRAHILLD  300
KVNLECPALL PPAAATALLL LILLLLPKSC CAGCCAAKMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A8e-16951621479Muscleblind-like protein 1
5u9b_A8e-16951621479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16979RSRSRSRSRSR
27179RSRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10260.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606341e-125AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636418.11e-110zinc finger CCCH domain-containing protein 28 isoform X2
SwissprotQ0JD071e-111C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A0D9W5930.0A0A0D9W593_9ORYZ; Uncharacterized protein
STRINGLPERR04G10260.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]