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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G09930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 192aa MW: 19605.7 Da PI: 6.788 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 51 | 3.3e-16 | 26 | 54 | 5 | 33 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpseg 33 +YkeC++NhAa++Gg+a+DGCgE+mps+ LPERR04G09930.1 26 KYKECMRNHAAAMGGQAFDGCGEYMPSSP 54 8*************************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.1E-12 | 26 | 55 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-12 | 26 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.507 | 27 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.08E-18 | 53 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-29 | 56 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-27 | 67 | 124 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MMDHLSLVPY DAGSGGAGAG GAGGGKYKEC MRNHAAAMGG QAFDGCGEYM PSSPDSLNGG 60 GSGSFGRKRF RTKFTAEQKE RMREFAEKQG WRINRNDDGA LDRFCLEIGV KRHVLKVWMH 120 NHKNHLASPT SAAAAAAGGV GVMNPSAAGI GLGVGVGVGV GVGGDGDGDD DDTDDSPPRA 180 AVSSPSPSPI SV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-24 | 68 | 124 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G09930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653420.2 | 7e-71 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q7X7N3 | 8e-39 | ZHD8_ORYSJ; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A0D9W546 | 1e-136 | A0A0D9W546_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G09930.1 | 1e-137 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13649 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 1e-21 | homeobox protein 33 |