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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
LPERR04G09760.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
GRAS |
| Protein Properties |
Length: 435aa MW: 45969.6 Da PI: 6.5825 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR04G09760.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 236.7 | 1e-72 | 62 | 431 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+v+ Ll+++ a ++gd+ +a ++L ++ +as +g +p qR+aa ++ ALa+r ++ +t +++++a+++f+++sP+++
LPERR04G09760.1 62 MVHFLLSAVAAGEAGDADAAASALREVYRHASRRGggEPGQRVAAIYADALASRSPA---------ATAAT----RADRFMAYTMFYQASPFYQ 142
5899***************************9998778***************9776.........23333....5899*************** PP
GRAS 93 fshltaNqaIleavege..........ervHiiDfdisqGlQWpaLlqaLasRp...egpp...slRiTgvgspesgskeeleetgerLakfAe 170
f+h+taNqaI ea++++ +++H++D+d+s+G+QWp+L+q+L++ + +++p slRiTg+g +++el+et+ rL++fA+
LPERR04G09760.1 143 FAHFTANQAIIEAFDSAaaaaagrrprRHLHVVDLDVSYGFQWPSLIQSLSDAAdtpAPAPvttSLRITGFGT----DADELHETEARLTRFAA 232
***************998888888887889********************976644455445569********....9***************9 PP
GRAS 171 el.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
+ +++fef+++ ++e+ ++++ + + g +++Vnlv+ + sl+s ++v +++sl P +v ++e+ d ++++ l +f+ ++y
LPERR04G09760.1 233 GFpNLQFEFDAI--LTTESSNIDRVKADDGATVVVNLVFPAAATS----SLSS--QTVNTIIRSLDPSMVFLIEKH-DEGGGEILPHFAVGVRY 317
9879******97..67788889*****************777776....4444..4466899********999986.6678999********** PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg...yrvee 353
y+a+f+sl++ lp+es er+ +Er lgrei ++v ++ h + W+e++++aG++ ++ls+++++qaklll++ + + g ++v e
LPERR04G09760.1 318 YAAVFESLHECLPAESGERVAIERNHLGREIADAVDSLRRH---GHGGGGGWKEAMGRAGLEGARLSSRTVSQAKLLLKMKSgGGGgggFHVVE 408
***********************************876665...9***********************************985433677***99 PP
GRAS 354 esgslv..lgWkdrpLvsvSaWr 374
g + l W+d +L ++++Wr
LPERR04G09760.1 409 GGGGMAmsLAWRDMALATATVWR 431
97776658**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 435 aa
Download sequence Send
to blast |
MNLTLSLAID GGAAAATAAA KKRKVVDGDR MVKKVERFDR GEDGEVMEAA TSDAGGGGGM 60
EMVHFLLSAV AAGEAGDADA AASALREVYR HASRRGGGEP GQRVAAIYAD ALASRSPAAT 120
AATRADRFMA YTMFYQASPF YQFAHFTANQ AIIEAFDSAA AAAAGRRPRR HLHVVDLDVS 180
YGFQWPSLIQ SLSDAADTPA PAPVTTSLRI TGFGTDADEL HETEARLTRF AAGFPNLQFE 240
FDAILTTESS NIDRVKADDG ATVVVNLVFP AAATSSLSSQ TVNTIIRSLD PSMVFLIEKH 300
DEGGGEILPH FAVGVRYYAA VFESLHECLP AESGERVAIE RNHLGREIAD AVDSLRRHGH 360
GGGGGWKEAM GRAGLEGARL SSRTVSQAKL LLKMKSGGGG GGGFHVVEGG GGMAMSLAWR 420
DMALATATVW RRRRQ
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL606458 | 3e-65 | AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence. |
| GenBank | AP014960 | 3e-65 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 3e-65 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
