PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G09540.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 356aa MW: 39179.4 Da PI: 7.7608

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G09540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.6e-09	130	183	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 h E RR++++s+f+ L l+P++ + + a+ + +++YIk+L+ LPERR04G09540.1 130 HACTEGERRKKMKSKFDHLHALVPNLLkkmYRVTRQTNRATLVDSTIDYIKQLE 183 888999*****************66585444455**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.017	125	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-9	129	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.02E-6	130	183	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.5E-10	130	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	130	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-5	133	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSQNNTNLPQ GIDKIHDHAF TNTLIVLTKM EYSDSSNARE KNTSSRPASP MVSGDVVEIK 60 ATRTDIVDDD EEERGESGGR DGIAREANEP KSKRSFDELV DLGPRAGDGR NGGSGKKKGK 120 NSIDVTHKLH ACTEGERRKK MKSKFDHLHA LVPNLLKKMY RVTRQTNRAT LVDSTIDYIK 180 QLEGNIKKLE MLKKERMLVS TAANNGSTSA PPPPPSLEVE KTTTPREITL ADLVNVWEAE 240 APLAPPPAVV TNDASTLARM QTWTGANMTV SLTGRDAFIT VSLPRPRDQS LFSTTLSILE 300 RHHIDVITAT VSTPELDTAL LSMHCQLRQE GSSSQNLTVM DKYKLAVSEL VLWVAI

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSQNNTNLPQ GIDKIHDHAF TNTLIVLTKM EYSDSSNARE KNTSSRPASP MVSGDVVEIK  60
ATRTDIVDDD EEERGESGGR DGIAREANEP KSKRSFDELV DLGPRAGDGR NGGSGKKKGK  120
NSIDVTHKLH ACTEGERRKK MKSKFDHLHA LVPNLLKKMY RVTRQTNRAT LVDSTIDYIK  180
QLEGNIKKLE MLKKERMLVS TAANNGSTSA PPPPPSLEVE KTTTPREITL ADLVNVWEAE  240
APLAPPPAVV TNDASTLARM QTWTGANMTV SLTGRDAFIT VSLPRPRDQS LFSTTLSILE  300
RHHIDVITAT VSTPELDTAL LSMHCQLRQE GSSSQNLTVM DKYKLAVSEL VLWVAI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G09540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9W4Z8	0.0	A0A0D9W4Z8_9ORYZ; Uncharacterized protein
STRING	LPERR04G09540.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	4e-15	bHLH family protein