PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G09510.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 456aa    MW: 49263.1 Da    PI: 8.8597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G09510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10101147555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h   E +RR++++s+f++L  l+P++     kK + a+i+  ++++Ik+L+
  LPERR04G09510.1 101 HAWTEGKRRNKMKSKFDNLHALVPSL----PKKTDQATIVGATIDFIKQLE 147
                      555799*******************7....399****************96 PP
2HLH38.32.4e-12407453555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      h  +Er RR+++++ f++L  llPk +     +K +Ka+i+ +A+ YIk L+
  LPERR04G09510.1 407 HIWMERERRKKMKNMFSTLHALLPKiP-----GKADKATIVNEAIGYIKTLE 453
                      7779*********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1295160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.23696146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13101160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-8101151No hitNo description
SMARTSM003533.2E-5102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-8104147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.1402452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13403455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10407453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12407454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-11407456No hitNo description
SMARTSM003530.0034408456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEYSDSGKAN EKNTSSKPAS PVVSGDVVDI KGTRSDIIGV SEEEGAEGGD RDGIARDANG  60
PKSKKSFDGL LDPVARVNEG RNRGSGNKKE KNSIDVAHRL HAWTEGKRRN KMKSKFDNLH  120
ALVPSLPKKT DQATIVGATI DFIKQLEGDV KKLEMLKNEL VAAAANMAAD TLQAPPPSPE  180
EKETTPREMT LANLVNVWEN EAAPLAAVIG DDAPALAPAP MQTWTGPNMM VSLTGRDAFI  240
TVSLPRPRDQ SLVAAAVSVL ERHHIDVITA TVSTPELDTT LLSMHCQLRQ ESNSSQNLTA  300
MDKYKLAVSE LMLLDYVIAA TTNNPVRSIK IEKSNSPSST DKPGEENAGL KVASPMVIGV  360
NTKNKETGKN IAIKREEVEG GGGAADISTQ GNKRKGKSVM DTKHALHIWM ERERRKKMKN  420
MFSTLHALLP KIPGKADKAT IVNEAIGYIK TLEDVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G09510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087282e-35AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9W4Z50.0A0A0D9W4Z5_9ORYZ; Uncharacterized protein
STRINGLPERR04G09510.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-20bHLH family protein