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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR04G09510.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 456aa MW: 49263.1 Da PI: 8.8597 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR04G09510.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 32.6 | 1.5e-10 | 101 | 147 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h E +RR++++s+f++L l+P++ kK + a+i+ ++++Ik+L+
LPERR04G09510.1 101 HAWTEGKRRNKMKSKFDNLHALVPSL----PKKTDQATIVGATIDFIKQLE 147
555799*******************7....399****************96 PP
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2 | HLH | 38.3 | 2.4e-12 | 407 | 453 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
h +Er RR+++++ f++L llPk + +K +Ka+i+ +A+ YIk L+
LPERR04G09510.1 407 HIWMERERRKKMKNMFSTLHALLPKiP-----GKADKATIVNEAIGYIKTLE 453
7779*********************88.....9****************995 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF47459 | 4.58E-12 | 95 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.236 | 96 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 101 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.50E-8 | 101 | 151 | No hit | No description |
SMART | SM00353 | 3.2E-5 | 102 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-8 | 104 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.1 | 402 | 452 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 403 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-10 | 407 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 407 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.31E-11 | 407 | 456 | No hit | No description |
SMART | SM00353 | 0.0034 | 408 | 456 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Sequence ? help Back to Top |
Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MEYSDSGKAN EKNTSSKPAS PVVSGDVVDI KGTRSDIIGV SEEEGAEGGD RDGIARDANG 60 PKSKKSFDGL LDPVARVNEG RNRGSGNKKE KNSIDVAHRL HAWTEGKRRN KMKSKFDNLH 120 ALVPSLPKKT DQATIVGATI DFIKQLEGDV KKLEMLKNEL VAAAANMAAD TLQAPPPSPE 180 EKETTPREMT LANLVNVWEN EAAPLAAVIG DDAPALAPAP MQTWTGPNMM VSLTGRDAFI 240 TVSLPRPRDQ SLVAAAVSVL ERHHIDVITA TVSTPELDTT LLSMHCQLRQ ESNSSQNLTA 300 MDKYKLAVSE LMLLDYVIAA TTNNPVRSIK IEKSNSPSST DKPGEENAGL KVASPMVIGV 360 NTKNKETGKN IAIKREEVEG GGGAADISTQ GNKRKGKSVM DTKHALHIWM ERERRKKMKN 420 MFSTLHALLP KIPGKADKAT IVNEAIGYIK TLEDVV
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108728 | 2e-35 | AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence. |