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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G09480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 24206.7 Da PI: 6.2681 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 67 | 116 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp +r +r++lg+f tae+Aa+a++aa+++++g LPERR04G09480.1 67 KYRGVRRRP-WGKWAAEIRDP----QRaARVWLGTFATAEDAARAYDAAALRFRG 116 8********.**********9....258************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 66 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-23 | 67 | 125 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.87 | 67 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-36 | 67 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 67 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-19 | 67 | 126 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MALSEPELAA ETEAIVSALT HVVACGGEEN AVAAVSTTAA ATTMTWRANV SGNDDDVAMM 60 TATAARKYRG VRRRPWGKWA AEIRDPQRAA RVWLGTFATA EDAARAYDAA ALRFRGSRAR 120 LNFPEDACRL RRPATAPAPM PSHSPLAAGD VAVADYLDYS RILAGPTTPS CDGFFAGGGG 180 GEVNGRFLRS WSIGTSPSSS GSGGGAAAGA GDLFHGGNNG WEQGTDGGGY NGFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 66 | 124 | 4 | 63 | ATERF1 |
3gcc_A | 1e-22 | 66 | 124 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G09480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880432.1 | 5e-47 | dehydration-responsive element-binding protein 1C-like | ||||
Swissprot | P93007 | 1e-28 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A0D9W4Z0 | 1e-166 | A0A0D9W4Z0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G09480.1 | 1e-167 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14299 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-24 | ethylene response factor 110 |