PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G07790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 330aa    MW: 35003.7 Da    PI: 5.4071
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G07790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.36.6e-2619101173
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                      rWt+qe+l+Lie+++ +e r r ++          ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++ +s
  LPERR04G07790.1  19 RWTRQEILVLIEGKKVVEGRGRGRRgggggagggaAEPTKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERSVNS 101
                      8******************9995433455556666*******************************************99754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-1119100No hitNo description
PROSITE profilePS500906.5391986IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.2E-51985IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASAGGEGGG SGRAPRLPRW TRQEILVLIE GKKVVEGRGR GRRGGGGGAG GGAAEPTKWA  60
AVAEYCRRHG LERGPVQCRK RWSNLAGDYK KIREWERSVN SPAAAGGGKE VSFWAMRNDA  120
RRERRLPGFF DREVYDILEG RAGNAAAAAA GKEEEEKVFD SSRRAGGGAG DGDDGLFSSE  180
EEDDEDEEAT PPAAAAPSVT TAAVAAVAPP PAPAAVAVPT SEKKTDPPRQ EASEQAGTSR  240
AKQPEQIVED SPAQGAHKRQ RSDDASGEAP DLQGQLIEIL DRSSRLVAAQ LEAQNINCQL  300
DREQRKDQVS SLLGVLGKVA DALYRIADKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G07790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-117CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826048.11e-132trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A0D9W4E10.0A0A0D9W4E1_9ORYZ; Uncharacterized protein
STRINGLPERR04G07790.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-46Trihelix family protein