PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G05730.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 360aa    MW: 40527.3 Da    PI: 7.8529
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G05730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.61.8e-15165214455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F++a++ L G+  A Pk+i+ +m+v+ + +++++ HLQk+Rl
  LPERR04G05730.1 165 LIWTPHLQRKFLHALQIL-GE-DASPKKIKMIMDVDNIDRKQIAAHLQKHRL 214
                      68****************.55.5****************************8 PP
2Response_reg48.26e-1711082107
                      EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +++d+++  ++    +l+ + ++ +v++++++ +al  lk++   +Dl+l+D+ m +m+G+e+lk  re ++++++i+++++ ++  +++++k+
  LPERR04G05730.1   1 MVIDEDECHADSTSCMLSaELNF-SVTVFTSPMKALYFLKNLAegVDLVLVDVHMEEMTGFEFLKVAREIHKSIQVIMMSTETTMHAMKRCVKL 93 
                      68999999999999999999999.*****************9999************************************************* PP

                      TESEEEESS--HHHH CS
     Response_reg  93 GakdflsKpfdpeel 107
                      Ga+  + Kp +   +
  LPERR04G05730.1  94 GARFLFKKPLNAGTI 108
                      ***999999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001569.71E-161115No hitNo description
Gene3DG3DSA:3.40.50.23007.0E-221115No hitNo description
SMARTSM004482.5E-71112IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.0261116IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521728.97E-211115IPR011006CheY-like superfamily
PfamPF000721.1E-141109IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466895.73E-12159218IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-15160218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-15165216IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVIDEDECHA DSTSCMLSAE LNFSVTVFTS PMKALYFLKN LAEGVDLVLV DVHMEEMTGF  60
EFLKVAREIH KSIQVIMMST ETTMHAMKRC VKLGARFLFK KPLNAGTIQN LWQHLDLKVL  120
RMKKIKDLLQ GNNRNVGVGD NSNCADETNP FAENLKDHTK KKYCLIWTPH LQRKFLHALQ  180
ILGEDASPKK IKMIMDVDNI DRKQIAAHLQ KHRLQQKKNL NKASFTKGTS EDGSNSRKEP  240
HPYTQPTETT MEILLKDANR KDVYAAMRTA LRHGTVFDES KYSSDPSGVE EQLVVGGDGR  300
AYEASVIDSS FGDQQIIAPC NAVSSQEMTN KITSCDMQTT RGSKKAAVFR LVNYSDSESD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G05730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691407.11e-148PREDICTED: two-component response regulator ORR29-like
SwissprotQ7XS691e-178ORR29_ORYSJ; Two-component response regulator ORR29
TrEMBLA0A0D9W3Q00.0A0A0D9W3Q0_9ORYZ; Uncharacterized protein
STRINGLPERR04G05730.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-21response regulator 14